View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_44 (Length: 204)
Name: NF10661_low_44
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 25003077 - 25002909
Alignment:
| Q |
19 |
ttatggagagaagtaaacacaacatgcataacaaattaagctatttttaatgcaaagcagtaaacaagtcgtttcctatatcatcataccctgttaagag |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25003077 |
ttatggagagaagtaaacacaacgtgcataacaaattaagctatttttaatgcaaagcagtaaacaagtcgtttcctatatcatcataccctgttaagag |
25002978 |
T |
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| Q |
119 |
ctgtccctctgttctataaatacatcacaacctaccaccaatataatctcattctaaacaagcatattc |
187 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25002977 |
ctgtccctctggtctataaatacatcacaacctaccaccaatataatctcattctaaacaagcatattc |
25002909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 6399181 - 6399013
Alignment:
| Q |
19 |
ttatggagagaagtaaacacaacatgcataacaaattaagctatttttaatgcaaagcagtaaacaagtcgtttcctatatcatcataccctgttaagag |
118 |
Q |
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||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
6399181 |
ttatgcagagaagtaaacagaacgtgcataacaaattaagctatttttaacgcaaagcagtaaacaaatcgtttcctaaatcatcataccctgctaagag |
6399082 |
T |
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| Q |
119 |
ct----gtccctctgttctataaatacatcacaacctaccaccaatataatctcattctaaacaagcat |
183 |
Q |
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|| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
6399081 |
cttatcgtccctttgttctataaatacatcacaacttaacaccaatataatctcattctaaacaagcat |
6399013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 16473211 - 16473043
Alignment:
| Q |
19 |
ttatggagagaagtaaacacaacatgcataacaaattaagctatttttaatgcaaagcagtaaacaagtcgtttcctatatcatcataccctgttaagag |
118 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473211 |
ttatggagagaagtaaacacaacgtgcataacaaattaagctatttttaatgcaaagcagtaaacaagtcgtttcctatatcatcataccctgttaagag |
16473112 |
T |
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| Q |
119 |
ctgtccctctgttctataaatacatcacaacctaccaccaatataatctcattctaaacaagcatattc |
187 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473111 |
ctgtccctctggtctataaatacatcacaacctaccaccaatataatctcattctaaacaagcatattc |
16473043 |
T |
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