View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10661_low_5 (Length: 416)

Name: NF10661_low_5
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10661_low_5
NF10661_low_5
[»] chr5 (2 HSPs)
chr5 (17-396)||(39184739-39185120)
chr5 (19-156)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (18-167)||(42373538-42373686)
chr1 (18-299)||(17032737-17033026)
chr1 (17-171)||(19597952-19598107)
chr1 (101-169)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (58-175)||(16501182-16501300)
chr4 (101-169)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (50-176)||(31902910-31903036)
chr2 (50-205)||(39339357-39339512)
chr2 (19-156)||(25505480-25505615)
chr2 (48-161)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (22-174)||(9519052-9519205)
chr8 (107-169)||(34866640-34866702)
chr8 (82-161)||(10551752-10551832)
chr8 (101-169)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (18-169)||(37792747-37792899)
chr7 (107-169)||(38484991-38485053)
chr7 (50-205)||(47326396-47326551)
chr7 (107-176)||(3420242-3420311)
chr7 (58-161)||(12480298-12480402)
chr7 (101-169)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (37-133)||(25595121-25595217)
chr3 (50-171)||(17501759-17501880)
chr3 (18-161)||(5555991-5556136)
chr3 (60-158)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (58-169)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 39184739 - 39185120
Alignment:
Q  17 agaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacga 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39184739 agaatatacccacaagccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacga 39184838  T
Q  117 aacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtc 216  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39184839 aacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtc 39184938  T
Q  217 gccggagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcat 316  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||     
T  39184939 gccggagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcac 39185038  T
Q  317 gtgagacacccagagnnnnnnngtcgatatatacccaaaaccgc---caaaaaaccaagcaaccagcaccactacccaccgtg 396  Q
    |||||||||||||||       ||||||||||||| |||||| |    |||||||||||||||||||||||||||||||||||    
T  39185039 gtgagacacccagag-aaaaaagtcgatatatacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacccaccgtg 39185120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 8730427 - 8730292
Alignment:
Q  19 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 118  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  8730427 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 8730330  T
Q  119 cacaactacaaaacatgggcaacgacgccagtttgaag 156  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  8730329 ccaaacaacaaaacacgggcagcgacgccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 42373686 - 42373538
Alignment:
Q  18 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaa 117  Q
    |||||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| |||||||||||||    
T  42373686 gaatatacccacaa-ccaaagatagagacaaaactacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaa 42373588  T
Q  118 acacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 167  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373587 acacaacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 17033026 - 17032737
Alignment:
Q  18 gaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaaga 113  Q
    ||||| ||||||||  || |||||||| ||||| |||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| |||||||    
T  17033026 gaataaacccacaaatcagcgatagagacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaaga 17032927  T
Q  114 cgaaacacaactac-aaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgta 212  Q
    |||||  |||| || ||||||  || |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |     
T  17032926 cgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttc 17032827  T
Q  213 tgtcgccggagtaaac---aaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagt 299  Q
     |||| ||||||||||   ||||||  |||| |||||||  |||||||  |||||| ||| ||||||||||||| |  ||||||||||||    
T  17032826 cgtcgtcggagtaaacaaaaaccaagtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaacacaaccaaaaccagt 17032737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 19598107 - 19597952
Alignment:
Q  17 agaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac 114  Q
    ||||||||| ||||| ||| ||| |||| ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | |||||||     
T  19598107 agaatatactcacaaaccatcgaaagagacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagat 19598009  T
Q  115 gaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 171  Q
    ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598008 gaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  101 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  58 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 156  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  157 cggaatcacaacctaaatc 175  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  101 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  50 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 148  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  149 gtttgaagcggaatcacaacctaaatca 176  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  50 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 148  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  149 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 205  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 25505480 - 25505615
Alignment:
Q  19 aatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaa 118  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | |||||||||||     
T  25505480 aatatacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaag 25505577  T
Q  119 cacaactacaaaacatgggcaacgacgccagtttgaag 156  Q
    |  ||| |||||||| ||||| |||||||||| |||||    
T  25505578 ccaaacaacaaaacacgggcagcgacgccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 22886011 - 22886124
Alignment:
Q  48 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 146  Q
    |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||||||    
T  22886011 aaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgc 22886109  T
Q  147 cagtttgaagcggaa 161  Q
    |||| ||||||||||    
T  22886110 cagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  22 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 119  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  120 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 174  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  107 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  82 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 161  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  101 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 37792899 - 37792747
Alignment:
Q  18 gaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacg 115  Q
    ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| | || |||| |    
T  37792899 gaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaagagaaagatg 37792801  T
Q  116 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    |||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792800 aaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  107 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  50 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 148  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  149 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 205  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  107 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 176  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  58 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 155  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  156 gcggaa 161  Q
    | ||||    
T  12480303 gtggaa 12480298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  101 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 169  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 25595121 - 25595217
Alignment:
Q  37 cgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 133  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595121 cgatagagacgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  50 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 148  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  149 gtttgaagcggaatcacaaccta 171  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 5556136 - 5555991
Alignment:
Q  18 gaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatcta-taggaagacg 115  Q
    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||| ||||||||| |  |||||||    
T  5556136 gaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaaacacatatctattttgaagacg 5556037  T
Q  116 aaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 161  Q
    || | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556036 aagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  60 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 157  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  58 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 156  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  157 cggaatcacaacc 169  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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