View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_6 (Length: 415)
Name: NF10661_low_6
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 42 - 407
Target Start/End: Complemental strand, 19500724 - 19500360
Alignment:
| Q |
42 |
taggccaggccaaacaaccaaagaatatgcaataatgaaaccaaatcatttgtgcaaagtcattgtaatcctccatatggttttactttttaacagttga |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| | ||||| | |
|
|
| T |
19500724 |
taggccaggccaaacaaccaaagaatatgcaataatgaaaccaaatcatttgtgcaaagtcactgtaatccttcatatggtcatactttt-agcagttaa |
19500626 |
T |
|
| Q |
142 |
acttcaatacccaaaataaaatggcaatgacaatnnnnnnngaagcaaagcaaatatgatttgcaattgcaagccttacccaacaagagcacagcagact |
241 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19500625 |
actacaatacctaaaataaaatggcaatgacaataaaaaaagaagcaaagcaaatatgatttgcaattgcaagccttacccaacaagagcacagcagact |
19500526 |
T |
|
| Q |
242 |
cctgcatggtcatgggagcaccaaagccaccacgcgattgcaaacaaagtcgcaaagcatggttctcagcatagcagcactgaagcaaatgctccagtct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19500525 |
cctgcatggtcatgggagcaccaaagccaccacgcgattgcaaacaaagccgcaaagcatggttctcagcatagcagcactgaagcaaatgctccaatct |
19500426 |
T |
|
| Q |
342 |
tctgcattccccttcaaaatacctactcttcgtctcaaggtttttcacatacaccttcttcatctc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
19500425 |
tctgcattccccttcaaaatacctactctttgtctcaaggtttttcacatacaccttcttcctctc |
19500360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University