View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10661_low_7 (Length: 413)
Name: NF10661_low_7
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_7 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 33974675 - 33975058
Alignment:
| Q |
17 |
agaaaaggtacttgttcttactttcttacatatgagtgttatctattatgtagcatcgacacacttcagaatgaagtcacatagaaagacgcctagttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
33974675 |
agaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacacttcagattgaagtcacatagaaagacgcctagttat |
33974774 |
T |
|
| Q |
117 |
aatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtttaccgcttaccattaaagtaattgctacatcactc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33974775 |
aatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtttaccgcttaccattaaagtaattgctacatcactc |
33974874 |
T |
|
| Q |
217 |
aaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccgaattacttactcgcctccaaa |
316 |
Q |
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|
||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33974875 |
aaaaatcggcctcatgacttgtggcataagatagtgaaggaactatcacaaggtcattcaattcttgattctaataccgaattacttactcgcctccaaa |
33974974 |
T |
|
| Q |
317 |
agatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33974975 |
agatcttcgatgttttggaagataatccaaaaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
33975058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 33991595 - 33991978
Alignment:
| Q |
18 |
gaaaaggtacttgttcttactttcttacatatgagtgttatctattatgtagcatcgacacacttcagaatgaagtcacatagaaagacgccta-gttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
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|
| T |
33991595 |
gaaaaggtacttgttcttactttcttgcatatgagcgttatctattatgtagcatcgacacacttcagattgaagtcacatagaaagatgcctatgttaa |
33991694 |
T |
|
| Q |
117 |
aatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtttaccgcttaccattaaagtaattgctacatcactc |
216 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33991695 |
aatcatttgattattgaccatatttacttgcaatgaattgcaggtcgttagaagttgcaaaggtttaccgcttaccattaaagtgattgctacatcactc |
33991794 |
T |
|
| Q |
217 |
aaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccgaattacttactcgcctccaaa |
316 |
Q |
| |
|
| ||||| ||| |||||||||||| |||||| |||| |||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33991795 |
agaaatcggcccgatgacttgtggcgtaagatagtgatggaattgtcacaaggtcattctattcttgattctaataccgaattacttactcgcctccaaa |
33991894 |
T |
|
| Q |
317 |
agatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
33991895 |
agatctttgatgttttggaagataatcctacaatcatggagtgcttcatggacatagccttatttcctgaagaccatagaattc |
33991978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 33952075 - 33952458
Alignment:
| Q |
18 |
gaaaaggtacttgttcttactttcttacatatgagtgttatctattatgtagcatcgacacacttcagaatgaagtcacatagaaagacgccta-gttct |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||| ||| |||| ||||||||| ||||| ||| | |
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|
| T |
33952075 |
gaaaaggtacttgttcttactttctaacatatgagcgttatctattatgtagcattgacacgcttcagattgatgtcaaatagaaagaagcctaagttat |
33952174 |
T |
|
| Q |
117 |
aatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtttaccgcttaccattaaagtaattgctacatcactc |
216 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952175 |
aatcatttgattactgaccaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtttaccgcttaccattaaagtaattgctacatcactc |
33952274 |
T |
|
| Q |
217 |
aaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccgaattacttactcgcctccaaa |
316 |
Q |
| |
|
||||||| ||||| |||| |||||| ||||| | ||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
33952275 |
aaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattcttgattctaatactgatttacttactcgcctccaaa |
33952374 |
T |
|
| Q |
317 |
agatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33952375 |
agatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttatttcccgaagaccatagaattc |
33952458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 33959576 - 33959758
Alignment:
| Q |
218 |
aaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccgaattacttactcgcctccaaaa |
317 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| | ||| |||||| ||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
33959576 |
aaaatcggcctcgtgacttgtggcgaaagatagggaaagaactagcacaaggtcattctcttcttgattctaataccaaattacttattcgcctccaaaa |
33959675 |
T |
|
| Q |
318 |
gatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33959676 |
gatctttgatgttttggaagataatcctacaatcatggagtgcttcatggacatagccttatttcccgaagaccatagaattc |
33959758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 400
Target Start/End: Original strand, 33912896 - 33913125
Alignment:
| Q |
171 |
ttgcaatggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggc |
270 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| ||||| |||||||||| |||| | ||||||||||| | ||||||||||||||||| || ||||| |
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|
| T |
33912896 |
ttgcaaaggtttacctcttgccattaaagtgattgcaacatcactcactaatcgttcatatgacttgtgggaaaagattgtgaaggaactttctcaaggt |
33912995 |
T |
|
| Q |
271 |
cattcaattcttgattctaataccgaattacttactcgcctccaaaagatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacc |
370 |
Q |
| |
|
| ||| || |||||||||| ||| ||||||||||||||||||| |||| |||| |||||||||||||||||| | | | || ||||||||||||||||| |
|
|
| T |
33912996 |
cgttctatacttgattctagtactgaattacttactcgcctccgaaaggtcttggatgttttggaagataatgctattaacaaggagtgcttcatggacc |
33913095 |
T |
|
| Q |
371 |
tagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
| || ||||| || ||||||| ||||||| |
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|
| T |
33913096 |
ttgcattattccctgaagacctgagaattc |
33913125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 400
Target Start/End: Original strand, 33941635 - 33941864
Alignment:
| Q |
171 |
ttgcaatggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggc |
270 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| ||||| |||||| || ||| || |||| || ||| | |||||||| |||||||| |||| ||| |
|
|
| T |
33941635 |
ttgcaagggtttaccacttgccattaaagtgattgcaacatcattccgttatcgaccatatgagttatgggaaaagattgtaaaggaactttcacgaggt |
33941734 |
T |
|
| Q |
271 |
cattcaattcttgattctaataccgaattacttactcgcctccaaaagatcttcgatgttttggaagataatcccacaatcatggagtgcttcatggacc |
370 |
Q |
| |
|
| ||| || |||||||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||| ||| | || |||||||||||||||| |
|
|
| T |
33941735 |
cgttctatacttgattctaatactgaattacttattcgcctccaaaagattttggatgttttggaagataatgccattagcaaagagtgcttcatggacc |
33941834 |
T |
|
| Q |
371 |
tagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
| || |||||||| ||||| || ||||||| |
|
|
| T |
33941835 |
ttgcattatttcctgaagatcagagaattc |
33941864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 127 - 400
Target Start/End: Original strand, 11776 - 12049
Alignment:
| Q |
127 |
ttactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcagc |
226 |
Q |
| |
|
|||||||||||| | ||||||| | || ||||||| || ||||||||||| |||||||||||||| ||| |||| |||||||||||||||| ||||| | |
|
|
| T |
11776 |
ttactgaccatatttgcttgcactcaaatgcaggttgtaagaagttgcaaaggtttaccgcttacgattgaagtgattgctacatcactcagaaatcgac |
11875 |
T |
|
| Q |
227 |
ctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccgaattacttactcgcctccaaaagatcttcga |
326 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||| || |
|
|
| T |
11876 |
cttatgacttgtggacaaagatagtgaaggaactgtcacaaggtcattctatacttgattctaatactgagttacttactcgcctccaaaagatctttga |
11975 |
T |
|
| Q |
327 |
tgttttggaagataatcccacaatcatggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
400 |
Q |
| |
|
|||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11976 |
tgttttcgaagataatctcataatcaaggagtgcttcatggacctagccttatttcccgaagaccatagaattc |
12049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 197 - 402
Target Start/End: Complemental strand, 8278498 - 8278287
Alignment:
| Q |
197 |
aagtaattgctacatcactcaaaaatcagcctcatgacttgtggcataagattgtgaaggaactatcacaaggccattcaattcttgattctaataccga |
296 |
Q |
| |
|
|||| ||||| |||||||| | || || ||| |||||||||||| |||||| |||| |||||| |||| ||| | ||| ||||||||||||||||||| |
|
|
| T |
8278498 |
aagtgattgcgacatcactaagaagtcggccagatgacttgtggcgtaagatagtgacggaactgtcacgaggtc-ttctgttcttgattctaataccga |
8278400 |
T |
|
| Q |
297 |
attacttactcgcctccaaaagatcttcgatgttttggaagataatcccacaat-------catggagtgcttcatggacctagccttatttcccgaaga |
389 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
8278399 |
attacttactcgcctccaaaagatattcgatgttttagaagataatcccacaatcatgattcatgaagtgcttcatggacatagccttatttcctgaagc |
8278300 |
T |
|
| Q |
390 |
ccatagaattcat |
402 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8278299 |
ccatagaattcat |
8278287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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