View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10661_low_8 (Length: 406)
Name: NF10661_low_8
Description: NF10661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10661_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 24484050 - 24483896
Alignment:
| Q |
134 |
ctacttgtaacctggaaaccgcatttgttggatcttgtgcccatgatatgagttcaccacctttgaagcaacttgcacttggttgattataaggtgtggt |
233 |
Q |
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| T |
24484050 |
ctacttgtaatcccgaaaccgcatttgttggatcttgtgcccatgatatgagttcactacctttgaaataacttgcactttgttgattataaggtgtggt |
24483951 |
T |
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| Q |
234 |
atagggagtaaacacataattttttgatctc-ttttacaacaatgtggaatgatt |
287 |
Q |
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| T |
24483950 |
atagggagtaaacacataattgtttgatctctttttacaacaatgtggaatgatt |
24483896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 24483399 - 24483289
Alignment:
| Q |
286 |
tttctttaaatttcaaacgatctccttgtttagtaacctagcttcccaccatggcccatattttctctttctttgcccatctctatcataatgaccatcc |
385 |
Q |
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| T |
24483399 |
tttctttaaattttaaacaatctccttgtttagtaaactagcttcccaccatggcccatattttctctttcttttcccatctctatcataatgaccatcc |
24483300 |
T |
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| Q |
386 |
atgtgttcatc |
396 |
Q |
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| T |
24483299 |
atgtgttcatc |
24483289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 24484159 - 24484080
Alignment:
| Q |
48 |
ggtttcacaaattaaagatttgtttgttcgcgagtattaccgagttctagtgttttaaaggggaacctttgcggcacagt |
127 |
Q |
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| T |
24484159 |
ggtttcacaaattaaagatttgtttgttcgcgagtattaccgagttctagtgttttcaaggtgaacttttgcggcacagt |
24484080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 384
Target Start/End: Complemental strand, 24487453 - 24487222
Alignment:
| Q |
150 |
aaccgcatttgttggatcttgtgcccatgatatgagttcaccacctttgaagcaacttgcacttggttgattataaggtgtggtatagggagtaaacaca |
249 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| ||| |||||| ||||||||||| ||||| | ||||| || | |||| | | || |
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| T |
24487453 |
aaccgcatttgttggatcttgtgtccatgatttgagttcatcacatttgaaaaaacttgcactttgttgactttaaggcgtttt---gggattgcatgca |
24487357 |
T |
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| Q |
250 |
taattttttgatctcttttacaacaatgtggaatgatttctttaaatttcaaacgatctccttgtttagtaacctagcttcccaccatggcccatatttt |
349 |
Q |
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| T |
24487356 |
caattgttcaattggttttacaaaaacatgggatgctttccttaaatttcaaacaatctccttctttagttgcctaccctcccaccttgtctcatattat |
24487257 |
T |
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| Q |
350 |
ctctttctttgcccatctctatcataatgaccatc |
384 |
Q |
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| T |
24487256 |
ctctttctttgcccatctctttcataataaccatc |
24487222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 24485018 - 24484987
Alignment:
| Q |
24 |
ttgtgtggtattgctaacctagtaggtttcac |
55 |
Q |
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| T |
24485018 |
ttgtgtggtattgctaacctagtaggtttcac |
24484987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 5549675 - 5549548
Alignment:
| Q |
259 |
gatctcttttacaacaatgtggaatgatttctttaaatttcaaacgatctccttgtttagtaacctagcttcccaccatggcccatattttctctttctt |
358 |
Q |
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| T |
5549675 |
gatcttttttacagcaatgcgggatgtttcctttaaatttcgaacaatctccttgttcagttgtctgacttcctaccatgttccatattacctctttctt |
5549576 |
T |
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| Q |
359 |
tgcccatctctatcataatgaccatcca |
386 |
Q |
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| T |
5549575 |
tgcccatgtccatcctaatgaccatcca |
5549548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 5549778 - 5549702
Alignment:
| Q |
154 |
gcatttgttggatcttgtgcccatgatatgagttcaccacctttgaagcaacttgcacttggttgattataaggtgt |
230 |
Q |
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|||||||||||||| ||||||||||| ||||| | ||||||||| | ||| ||||| || ||||||| || ||||| |
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| T |
5549778 |
gcatttgttggatcctgtgcccatgagctgagtactccacctttgcaacaatttgcagtttgttgattgtagggtgt |
5549702 |
T |
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