View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10662_high_1 (Length: 414)
Name: NF10662_high_1
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_high_1 |
 | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0079 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 55948 - 56257
Alignment:
| Q |
5 |
tgtttatatatatttttcacacacattctttctagttttggaggaacaagtaatgttactgaaaatgcacaaaatgccattaaagtttgtaggaatattt |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
55948 |
tgtttatatatatttttgacacacattctttctagttttggaggaacaagtaatgttactgaaa-tgcacaaaatgccagtaaagtttgtaggaatattt |
56046 |
T |
|
| Q |
105 |
gaattaaggagaaagtagagttaacaaaatgatgggttgaaacgtgggcaccagaagacaacagctgtaagtaagtaggttgcaagttgcattgaatttg |
204 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
56047 |
gaatta-ggagaaactatagttaacaaaatgatgggttgaaacgtgggcaccagaagacaacagctgtaa----gtaggttgcaagttgcattgaatttg |
56141 |
T |
|
| Q |
205 |
aaactttcattttaggatccacgcaagcatgcgttgtcaagttgtttttgcgtctaggataagtatctatcttttcacccattcgatggaatatgtctct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56142 |
aaactttcattttaggatccacgcaagcatgcgttgtcaagttgtttttgcgtctaggataagtatctatcttttcacccattcgatggaatatgtctct |
56241 |
T |
|
| Q |
305 |
cttcctcttcttctca |
320 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
56242 |
cttcctcttcttctca |
56257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 320
Target Start/End: Complemental strand, 16336912 - 16336603
Alignment:
| Q |
5 |
tgtttatatatatttttcacacacattctttctagttttggaggaacaagtaatgttactgaaaatgcacaaaatgccattaaagtttgtaggaatattt |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16336912 |
tgtttatatatatttttgacacacattctttctagttttggaggaacaagtaatgttactgaaa-tgcacaaaatgccagtaaagtttgtaggaatattt |
16336814 |
T |
|
| Q |
105 |
gaattaaggagaaagtagagttaacaaaatgatgggttgaaacgtgggcaccagaagacaacagctgtaagtaagtaggttgcaagttgcattgaatttg |
204 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16336813 |
gaatta-ggagaaactatagttaacaaaatgatgggttgaaacgtgggcaccagaagacaacagctgtaagta----ggttgcaagttgcattgaatttg |
16336719 |
T |
|
| Q |
205 |
aaactttcattttaggatccacgcaagcatgcgttgtcaagttgtttttgcgtctaggataagtatctatcttttcacccattcgatggaatatgtctct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16336718 |
aaactttcattttaggatccacgcaagcatgcgttgtcaagttgtttttgcgtctaggataagtatctatcttttcacccattcgatggaatatgtctct |
16336619 |
T |
|
| Q |
305 |
cttcctcttcttctca |
320 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16336618 |
cttcctcttcttctca |
16336603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 10455735 - 10455782
Alignment:
| Q |
350 |
agtccccgtgatcatagttcagtttgtaggaacatgcgttgttatatg |
397 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||| |||||||||| |
|
|
| T |
10455735 |
agtccccgtgagcatagttcagttggcaggaacatgcattgttatatg |
10455782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 7906427 - 7906381
Alignment:
| Q |
351 |
gtccccgtgatcatagttcagtttgtaggaacatgcgttgttatatg |
397 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
7906427 |
gtccccgtgagcatagttcagttggtagggacatgcattgttatatg |
7906381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 24168681 - 24168633
Alignment:
| Q |
350 |
agtccccgtgatcatagttcagtttgtaggaacatgcgttgttatatgt |
398 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
24168681 |
agtctccgtgagcatagctcagtttgtaggaacatgcattattatatgt |
24168633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 31917957 - 31917921
Alignment:
| Q |
362 |
catagttcagtttgtaggaacatgcgttgttatatgt |
398 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
31917957 |
catagctcagtttgtaggaacatgcattgttatatgt |
31917921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University