View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10662_high_11 (Length: 238)
Name: NF10662_high_11
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12271061 - 12271283
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12271061 |
tgaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcaagaatcgccgtttcgga |
12271160 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12271161 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgaggaattgggaagggaggcaaaatggagttattcattttggtgtg |
12271260 |
T |
|
| Q |
201 |
agggtggttgtgccagagcaaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12271261 |
agggtggttgtgccagagcaaag |
12271283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 12287729 - 12287949
Alignment:
| Q |
3 |
aacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggata |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
12287729 |
aacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttcgacctattggggtggcaagaatcgccgtttcggata |
12287828 |
T |
|
| Q |
103 |
ttctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgag |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287829 |
ttctaaacggggctgaatcggaaaattgttcacgaattttgagttataaattgagagattgggaagggaggcaaaatggagttattcattttggtgtgaa |
12287928 |
T |
|
| Q |
203 |
ggtggttgtgccagagcaaag |
223 |
Q |
| |
|
|||||||| ||||||| |||| |
|
|
| T |
12287929 |
ggtggttgcgccagaggaaag |
12287949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12282877 - 12283099
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||| | ||||||||| |
|
|
| T |
12282877 |
tgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcgga |
12282976 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
| |||| || || | | ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12282977 |
ttttctcaatggcgccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattcatttcagtgtg |
12283076 |
T |
|
| Q |
201 |
agggtggttgtgccagagcaaag |
223 |
Q |
| |
|
|||||||||||||| ||| |||| |
|
|
| T |
12283077 |
agggtggttgtgccggaggaaag |
12283099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12267151 - 12267373
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||| | ||||||||| |
|
|
| T |
12267151 |
tgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcgga |
12267250 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
| |||| || || | ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12267251 |
ttttcttaatggcaccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggggttattcattttagtgtg |
12267350 |
T |
|
| Q |
201 |
agggtggttgtgccagagcaaag |
223 |
Q |
| |
|
|||||||||||||| ||| |||| |
|
|
| T |
12267351 |
agggtggttgtgccggaggaaag |
12267373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12257057 - 12257270
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||||| |
|
|
| T |
12257057 |
tgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcgga |
12257156 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
| |||| || || | |||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12257157 |
ttttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtg |
12257256 |
T |
|
| Q |
201 |
agggtggttgtgcc |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12257257 |
agggtggttgtgcc |
12257270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12264449 - 12264662
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||| ||||||||||||||| || ||||||| |
|
|
| T |
12264449 |
tgaacatgccattgcatgcaaggtcaatcacttttgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcgga |
12264548 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
| |||| || || | |||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12264549 |
ttttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtg |
12264648 |
T |
|
| Q |
201 |
agggtggttgtgcc |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12264649 |
agggtggttgtgcc |
12264662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29197783 - 29198005
Alignment:
| Q |
1 |
tgaacataccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||| |
|
|
| T |
29197783 |
tgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtgacacgaatcgccgttttgga |
29197882 |
T |
|
| Q |
101 |
tattctaaacggggatgaatcggaaaattgttcacgaattttgagttataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtg |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29197883 |
tattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtg |
29197982 |
T |
|
| Q |
201 |
agggtggttgtgccagagcaaag |
223 |
Q |
| |
|
||||||||| |||| ||| |||| |
|
|
| T |
29197983 |
agggtggttatgccggagaaaag |
29198005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University