View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10662_high_5 (Length: 309)

Name: NF10662_high_5
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10662_high_5
NF10662_high_5
[»] chr3 (2 HSPs)
chr3 (196-296)||(35177947-35178047)
chr3 (24-87)||(35177775-35177838)
[»] chr4 (2 HSPs)
chr4 (31-87)||(38949026-38949082)
chr4 (31-87)||(51834998-51835054)
[»] chr1 (3 HSPs)
chr1 (32-87)||(30529437-30529492)
chr1 (31-87)||(14758642-14758698)
chr1 (31-87)||(44329680-44329736)
[»] chr8 (2 HSPs)
chr8 (31-87)||(4384102-4384158)
chr8 (31-87)||(45197461-45197517)
[»] chr7 (1 HSPs)
chr7 (31-87)||(26284-26340)
[»] chr5 (2 HSPs)
chr5 (31-87)||(16667258-16667314)
chr5 (31-87)||(18229568-18229624)
[»] chr2 (2 HSPs)
chr2 (51-87)||(19890175-19890211)
chr2 (31-87)||(31452313-31452369)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 35177947 - 35178047
Alignment:
Q  196 atgacgattttcttatatatctctctcactccattgtgagactcaacacaacacactaaactcaacatctcaaaatgaaaatttacttcaccttcctgtt 295  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35177947 atgaccattttcttatatatcactctcactccattgtgagactcaacacaacacactaaactcaacatctcaaaatgaaaatttacttcaccttcctgtt 35178046  T
Q  296 c 296  Q
    |    
T  35178047 c 35178047  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 35177775 - 35177838
Alignment:
Q  24 cttatctgaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||| ||||||||||||||||||||||    ||||| ||||||||||||||||||||||||||    
T  35177775 cttatgtgaaatgttaacgagtgttttcgaagcattcgttaagcacttaaaatagtaaattttt 35177838  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 38949026 - 38949082
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    |||||||||||||||||||| ||| || |||||||| |||| |||||||||||||||    
T  38949026 gaaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaattttt 38949082  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 51835054 - 51834998
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||||  |  |||| ||||||| ||||| |||||||||||||||    
T  51835054 gaaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaattttt 51834998  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 30529492 - 30529437
Alignment:
Q  32 aaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||    
T  30529492 aaatgttaacgagtgcttttaagacattctttaaggactttaaatagtaaattttt 30529437  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14758698 - 14758642
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    |||||||||||||||| | | |||||| |||||||| |||| |||||||||||||||    
T  14758698 gaaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaattttt 14758642  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 44329736 - 44329680
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||| || |||||    
T  44329736 gaaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagttttt 44329680  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 4384102 - 4384158
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    |||| ||||||||||||| || ||||| ||||||||||||| ||||  |||||||||    
T  4384102 gaaacgttaacgagtgttctcgggacactctttaagcactttaaatgataaattttt 4384158  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 45197517 - 45197461
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||  | ||||||| ||||||| ||| | |||||||||||||||    
T  45197517 gaaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttt 45197461  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 26340 - 26284
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||| |||||||||||  | ||||||||||||||| |||| ||||| |||||||||    
T  26340 gaaatattaacgagtgtccttaggacattctttaagaactttaaataataaattttt 26284  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 16667258 - 16667314
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||| | ||| ||| | ||||||||||| ||||||||| |||||    
T  16667258 gaaatgttaacgagtgtctccagaacactttttaagcactttaaatagtaagttttt 16667314  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 18229568 - 18229624
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    |||||||||||||||| || | ||||| ||||||||||||| |||| |||| |||||    
T  18229568 gaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagttttt 18229624  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 19890175 - 19890211
Alignment:
Q  51 caggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  19890175 caggacattctttaagcacttaaaataataagttttt 19890211  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 31452313 - 31452369
Alignment:
Q  31 gaaatgttaacgagtgttttcaggacattctttaagcacttaaaatagtaaattttt 87  Q
    ||||||||||||||||||  | | ||||| ||||||||||| ||||||||| |||||    
T  31452313 gaaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagttttt 31452369  T

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