View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10662_low_1 (Length: 437)
Name: NF10662_low_1
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 7304335 - 7304741
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7304335 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
7304434 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7304435 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
7304534 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnnnnnnctgct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7304535 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggctttttttctgct |
7304634 |
T |
|
| Q |
316 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7304635 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
7304734 |
T |
|
| Q |
416 |
acatttt |
422 |
Q |
| |
|
||||||| |
|
|
| T |
7304735 |
acatttt |
7304741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 16443850 - 16443444
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16443850 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
16443751 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16443750 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagaagatgaagagtt |
16443651 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnnnnnnctgct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16443650 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggctttttttctgct |
16443551 |
T |
|
| Q |
316 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16443550 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
16443451 |
T |
|
| Q |
416 |
acatttt |
422 |
Q |
| |
|
||||||| |
|
|
| T |
16443450 |
acatttt |
16443444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 40287218 - 40286812
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
40287218 |
aggtctagcatcaatagacctgccgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttac |
40287119 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
40287118 |
cggcaatcaaagaaaaatggccacgagaatatgcacatgaaacaatttacattcaacaagataatgcaccttgtcatgtgcctctagatgatgaagagtt |
40287019 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnnnnnnctgct |
315 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||| |||| |
|
|
| T |
40287018 |
ttgtagagcggcttgcgatgggggattcgacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggctttttttctgcc |
40286919 |
T |
|
| Q |
316 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40286918 |
attcaatccttgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtggagaaatcttttgatgctttttccgcccaaagttcgaaca |
40286819 |
T |
|
| Q |
416 |
acatttt |
422 |
Q |
| |
|
||||||| |
|
|
| T |
40286818 |
acatttt |
40286812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 6124513 - 6124919
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6124513 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
6124612 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6124613 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
6124712 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnnnnnnctgct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6124713 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggctttttttctgct |
6124812 |
T |
|
| Q |
316 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6124813 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaaatttttgatgctttttccgcccaaagttcgaaca |
6124912 |
T |
|
| Q |
416 |
acatttt |
422 |
Q |
| |
|
||||||| |
|
|
| T |
6124913 |
acatttt |
6124919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 1654172 - 1654364
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
1654172 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
1654271 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1654272 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
1654364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 45222146 - 45222338
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
45222146 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
45222245 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
45222246 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
45222338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 9130030 - 9129838
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
9130030 |
ttttaccggccgtcaaagaaaaagtgccactagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
9129931 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||| ||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
9129930 |
agaatttcaagcagcagcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
9129838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 37151828 - 37151909
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtca |
191 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
37151828 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtca |
37151909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 24742303 - 24742709
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
24742303 |
aggtctagcatcaatagacctgccgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttac |
24742402 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
24742403 |
cggcaatcaaagaaaaatggccacgagaatatgcacatgaaacaatttacattcaacaagataatgcaccttgtcatgtgcctctagatgatgaagagtt |
24742502 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnnnnnnctgct |
315 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || ||||| ||||| ||| |||| |
|
|
| T |
24742503 |
ttgtagagcggcttgcgatgggggattcgacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattagatttaggctttttttctgcc |
24742602 |
T |
|
| Q |
316 |
attcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaaca |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24742603 |
attcaatccttgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtggagaaatcttttgatgctttttccgcccaaagttcgaaca |
24742702 |
T |
|
| Q |
416 |
acatttt |
422 |
Q |
| |
|
||||||| |
|
|
| T |
24742703 |
acatttt |
24742709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 4203037 - 4203445
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
4203037 |
aggtctagcatcaatagacctatcgggacacttgaaacaaaaccaatcacttctataaatagagaagtcactcgaaagatgtatatcgacgaagttttac |
4203136 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
| || || ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4203137 |
cagcaatcgaagaaaaatggccacgagaatatgcacatgaaacaatttacattcaacaagataatgcaccttgtcacttgcctttagatgatgaagagtt |
4203236 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg--cnnnnnnnctg |
313 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| || ||| |
|
|
| T |
4203237 |
ttgtagagaggcttgcgatgggggattcgacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggatttttttttctg |
4203336 |
T |
|
| Q |
314 |
ctattcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaa |
413 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4203337 |
ccattcaatccttgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcgaa |
4203436 |
T |
|
| Q |
414 |
caacatttt |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
4203437 |
caacatttt |
4203445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 10368635 - 10368225
Alignment:
| Q |
16 |
aggtctagcatcaataggcctgccgggacacttgaaacaaaaccaatcatttctataaacagagaagtcactagaatgatgtatatcaacgaagttttac |
115 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||| |||||||||| ||||||||| |||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
10368635 |
aggtctagcatcaatagacatgtcgggacacttgaaacgaaaccaatcacttctataaatagagaagtcactcaaaagatgtatatcgacgaagttttac |
10368536 |
T |
|
| Q |
116 |
cggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatgaagagtt |
215 |
Q |
| |
|
|||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
10368535 |
cggcaatctaagaaaaatggccacgagaacatgcacatgaaacaatttacattcaacaagataatacaccttgtcatgtgcctttagatgatgaagagtt |
10368436 |
T |
|
| Q |
216 |
ttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggc----nnnnnnnc |
311 |
Q |
| |
|
| ||||||||||| |||||||||| || |||||||| || ||||||||||||||||| ||||| ||||| || ||||||||||| | | |
|
|
| T |
10368435 |
tggtagagcggcttccgatgggggattcgacattcgattgacttttcaacctcctaattctcctgatttgaacgtattggatttagtctttttttttttt |
10368336 |
T |
|
| Q |
312 |
tgctattcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcg |
411 |
Q |
| |
|
||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10368335 |
tgccattcaatcattgtagcaacatgaagtaagtaattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttccgcccaaagttcg |
10368236 |
T |
|
| Q |
412 |
aacaacatttt |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
10368235 |
aacaacatttt |
10368225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 398
Target Start/End: Original strand, 45489109 - 45489402
Alignment:
| Q |
107 |
aagttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatga |
206 |
Q |
| |
|
|||||||||||||| | ||| || |||||||||||||||||| ||||||||||| || ||||||||||| || || || || | || ||||| |
|
|
| T |
45489109 |
aagttttaccggccattaaacaattttggccacaagaacatgcaatggaaacaatttatatacaacaagataacgcgccatgccatatttctcctgatga |
45489208 |
T |
|
| Q |
207 |
tgaagagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttgggcnnn |
306 |
Q |
| |
|
|||||| ||||||||||| ||| | || || || ||||||||||| || | | |||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
45489209 |
tgaagaattttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttgggtttc |
45489308 |
T |
|
| Q |
307 |
nnnnctgctattcaatcattgcagcaacaggaagtaac--taattcggttgatgcacttattgaagctgtgcaaaaatcttttgatgctttttc |
398 |
Q |
| |
|
|| |||||||||||||||||||| ||||| || || || ||||||| ||||| |||| |||||||||||| | ||||| |||||| |
|
|
| T |
45489309 |
tttagtgtcattcaatcattgcagcaacaagaagttactatagatcagttgatgagcttatcgaagttgtgcaaaaatcatatgatgatttttc |
45489402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 12812219 - 12812027
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
12812219 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
12812120 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
12812119 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
12812027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 3791782 - 3791590
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
3791782 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
3791683 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3791682 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
3791590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 23780100 - 23780292
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
23780100 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
23780199 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
23780200 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
23780292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 52636843 - 52636651
Alignment:
| Q |
110 |
ttttaccggccctcaaagaaaaatggccacaagaacatgcacatgaaacaatttacatccaacaagataatgcaccttgtcacgtgcctttagatgatga |
209 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||| ||||||||||||||||| ||||| || || | ||||| || |
|
|
| T |
52636843 |
ttttaccggccgtcaaagaaaaagtgccaccagaacttgcatcggaaacaatttacattcaacaagataatgcaccgtgtcatgtttctgttgatgacga |
52636744 |
T |
|
| Q |
210 |
agagttttgtagagcggctgccgatgggggttttgacattcgtttaacttttcaacctcctaactctcccgatttaaatgtattggatttggg |
302 |
Q |
| |
|
||| ||| ||||||| | || || || |||||||| ||||| | | ||| || ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
52636743 |
agaatttcaagcagcggcttctgaaggtggatttgacatccgtttgattaatcagccacctaattctcctgatttaaatgtattggatttggg |
52636651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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