View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_10 (Length: 279)
Name: NF10662_low_10
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 6463895 - 6464150
Alignment:
| Q |
17 |
actctttacagcatcagcagcctcttgtgtgtttgccttcatttgctgatcaccctacaccaatnnnnnnnnnnnnnnnnnntcattagtcacaaaaatt |
116 |
Q |
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| T |
6463895 |
actctttacagcatcagcagcctcttgtgtgtttgccttcatttgctgatcaccctacaccaataaaaaaaaaaaaaaaa--tcattagtcaccaaaatt |
6463992 |
T |
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| Q |
117 |
gataatttacaagtttttctactctacnnnnnnn-gataaaattctatttctccataatcttgaggaac-ttttatatacaaaattgttagtatgcattt |
214 |
Q |
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| T |
6463993 |
gataatttacaagtttttctactctacttttttttgataaaattctatttctccataatcttgaggaacattttatatacaaaaatgttagtatgcattt |
6464092 |
T |
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| Q |
215 |
gttagaaatgttagtaggagatacgaatccacatcaatctatctctccgactcctatg |
272 |
Q |
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| T |
6464093 |
gttagaaatgttagtaggagatacgaatccacatcaatctatctctccgactcttatg |
6464150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 6453253 - 6453417
Alignment:
| Q |
99 |
tcattagtcacaaaaattgataatttacaagtttttctactctacnnnnnnng-ataaaattctatttctccataatcttgaggaac-ttttatatacaa |
196 |
Q |
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| T |
6453253 |
tcatcagtcaccaaaattgataatttacaagcatttctactgtactgtttttttataaaatttcatttctccataatcttgagaaacattttatatacaa |
6453352 |
T |
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| Q |
197 |
aattgttagtatgcatttgttagaaatgttagtaggagatacgaatccacatcaatctatctctc |
261 |
Q |
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| T |
6453353 |
aaatgttagtatgtatttgttacaaatgttagtaggggatacgaatccacatcaatctatctctc |
6453417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 6453176 - 6453229
Alignment:
| Q |
19 |
tctttacagcatcagcagcctcttgtgtgtttgccttcatttgctgatcaccct |
72 |
Q |
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| T |
6453176 |
tctttgcagcatcagcaacctcttgtgcatctgccttcatttgctgaccaccct |
6453229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 44942281 - 44942337
Alignment:
| Q |
19 |
tctttacagcatcagcagcctcttgtgtgtttgccttcatttgctgatcaccctaca |
75 |
Q |
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| T |
44942281 |
tcttaacagcatcagcagcctcttgtgccttagccttcatttgttgaccagcctaca |
44942337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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