View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_12 (Length: 250)
Name: NF10662_low_12
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 12270856 - 12270619
Alignment:
| Q |
3 |
aaaatatgtattagtgtaagaatgaatatattgttatgtccttcaattttgtagtgatggaattgaggtggttgtgtgaatatataataagttttgggat |
102 |
Q |
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| T |
12270856 |
aaaatatgtattagtgtaagaatgaatatattgttatgtccttcaattttgtagtgatggaattgaggtggttgtgtgaatatataataagttttgggat |
12270757 |
T |
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| Q |
103 |
cttgatttggtaggtgaccggtgagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaatg |
202 |
Q |
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| T |
12270756 |
cttgatttggtaggtgaccggtgagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaatg |
12270657 |
T |
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| Q |
203 |
tccgtttttcttggttttgacttataactttgcctttg |
240 |
Q |
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| T |
12270656 |
tccgtttttgttggttttgacttataactttgcctttg |
12270619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12256849 - 12256609
Alignment:
| Q |
1 |
caaaaatatgtattagtgtaagaatgaatatattgttatgtccttcaattttgtagtgatggaattgaggtggttgtgtgaatatataataagttttggg |
100 |
Q |
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| T |
12256849 |
caaaaatatgtattagtgtaagaatgaatatattgttacgtccttcaattttgtagtgatggaattgaggtggttgtatgaatatataagaagttttggg |
12256750 |
T |
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| Q |
101 |
atcttgatttggtaggtgaccggtgagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
200 |
Q |
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| T |
12256749 |
atcttgatttggtaggtgactagtgagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12256650 |
T |
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| Q |
201 |
tgtccgtttttcttgg-ttttgacttataactttgcctttg |
240 |
Q |
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| T |
12256649 |
tgtccgtttttgttggattttgacttataactttgcctttg |
12256609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12264241 - 12264001
Alignment:
| Q |
1 |
caaaaatatgtattagtgtaagaatgaatatattgttatgtccttcaattttgtagtgatggaattgaggtggttgtgtgaatatataataagttttggg |
100 |
Q |
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| T |
12264241 |
caaaaatatgtattagtgtaagaatgaatatattgttacgtccttcaattttgtagtgatggaattgaggtggttgtatgaatatataagaagttttggg |
12264142 |
T |
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| Q |
101 |
atcttgatttggtaggtgaccggtgagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
200 |
Q |
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| T |
12264141 |
atcttgatttggtaggtgactagtgagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12264042 |
T |
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| Q |
201 |
tgtccgtttttcttgg-ttttgacttataactttgcctttg |
240 |
Q |
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| T |
12264041 |
tgtccgtttttgttggattttgacttataactttgcctttg |
12264001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 29197502 - 29197446
Alignment:
| Q |
122 |
ggtgagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtattt |
178 |
Q |
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| T |
29197502 |
ggtgagaaagagggaaagaaagaaagagtgtaattggtttgttgtttcggtgtattt |
29197446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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