View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_3 (Length: 364)
Name: NF10662_low_3
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 34042595 - 34042926
Alignment:
| Q |
16 |
cagagaccttcacaacccctcatgacattctttttcgcaatcttgctgtttctatgatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatt |
115 |
Q |
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| T |
34042595 |
cagacaccttcacaacccctcatgacattctttttcgcaatcttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatt |
34042694 |
T |
|
| Q |
116 |
tcatcatcgattcattgagaaaattcatgtcatttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgtt |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042695 |
tcatcatcgattcattgagaaaattcatgccatttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgtt |
34042794 |
T |
|
| Q |
216 |
gtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042795 |
gtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgc |
34042894 |
T |
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| Q |
316 |
tgattttttgttacatgcagctctcgaggagt |
347 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
34042895 |
tgattttttgttacattcagctctcgaggagt |
34042926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 4046531 - 4046456
Alignment:
| Q |
38 |
tgacattctttttcgcaatcttgctgtttctatgatcgccaaggtcagtcatcatttcgagcttcgttttcttgaa |
113 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
4046531 |
tgacattctttttcgcaatcttgctgtttctgtaatcgtcaaggtcagtcatcattttgagctttgttttcttgaa |
4046456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 4046366 - 4046287
Alignment:
| Q |
268 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacatgcagctctcgaggagt |
347 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagt |
4046287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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