View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_4 (Length: 336)
Name: NF10662_low_4
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 34860918 - 34860597
Alignment:
| Q |
1 |
gaatttgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcatatgaaaattgttgctcactt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34860918 |
gaattcgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcactt |
34860819 |
T |
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| Q |
101 |
gtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860818 |
gtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatatttt |
34860719 |
T |
|
| Q |
201 |
agcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34860718 |
agcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagcctgcagggaaatacatgatgaa |
34860619 |
T |
|
| Q |
301 |
gcttatatgtgtaagttgatgt |
322 |
Q |
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| T |
34860618 |
gcttatatgtgtaagttgatgt |
34860597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
143 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
242 |
Q |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
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| Q |
243 |
taatatttttg-tttgaaagtggattatagatttagggt |
280 |
Q |
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| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
143 |
tatgatttggatctttagttatgttgaagttcatatatga |
182 |
Q |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
228 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
302 |
Q |
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||||||||||||| |||||||||||||| ||| |||| ||||||||||| || | |||||||||||||||| |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 36341389 - 36341437
Alignment:
| Q |
56 |
gacatatgaacctatatattagcatatgaaaattgttgctcacttgttt |
104 |
Q |
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||||||||||| ||| ||||||| |||| ||||||||| |||||||||| |
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| T |
36341389 |
gacatatgaacttatgtattagcttatgtaaattgttgttcacttgttt |
36341437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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