View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_5 (Length: 335)
Name: NF10662_low_5
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 2391986 - 2391691
Alignment:
| Q |
1 |
aactcaaataaatataaacttcattttcttaaatataccttataaattaatnnnnnnnnttagttatttactaagagtccattagattaaattaaaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391986 |
aactcaaataaatataaacttcattttcttaaatataccgtataaattaataaaaaaaattagttatttactaagagtccattagattaaattaaaattt |
2391887 |
T |
|
| Q |
101 |
gtaaatcctcagtaagagtgatttagtgnnnnnnnnnnnnnnnngcgcaaacgatgtatctttacgcataactgtagttaattcgaataccgtaaagatc |
200 |
Q |
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|||||| | |||||| ||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
2391886 |
gtaaattcccagtaaaagtgatttagt-------ttttttttttgtgcaaacgatatatctttacgcataactgtagttgattcgaataacgtaaagatc |
2391794 |
T |
|
| Q |
201 |
agctaagacacacattatcatagtttaattcaattattannnnnnnatatnnnnnnngaccgttaaatttgtatgacatggtttgtctttgttccttttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391793 |
agctaagacacacattatcatagtttaattcaattattatttttttatataaaaaaagaccgttaaatttgtatgacatggtttgtctttgttccttttg |
2391694 |
T |
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