View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_8 (Length: 300)
Name: NF10662_low_8
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 34059832 - 34060095
Alignment:
| Q |
19 |
agagtgcatcgattttcattatcatattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttg |
118 |
Q |
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| T |
34059832 |
agagtgcatcgattttcattatcatattatcaagtttattcaggaagtcaggtggacaactgaaaagcactgcggagattgaagagagcctgcaatgttg |
34059931 |
T |
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| Q |
119 |
gctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgcttcctagtatagctgnnnnnnnnnnnngacagacttcgataaaatcaacc |
218 |
Q |
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| T |
34059932 |
gctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgctacctagtatagctgtttttttt-----acatacttcgataaaatcaacc |
34060026 |
T |
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| Q |
219 |
aatcatcacagaaaacagttgattcaattcagagattgagagttaagtttcaaggcaattttgatctgt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34060027 |
aatcatcacagaaaacagttgattcaattcagagattgagagttaagtttcaaggcaattttgatctgt |
34060095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 22232376 - 22232275
Alignment:
| Q |
81 |
aaaagcactgcggagattgaagagagcctgcaatgttggctcgcgttcatagtttccaactctaaaagagcagtacaacagtgcatgcttcctagtatag |
180 |
Q |
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||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| || |||||||||| |||||| |||||||| || ||| ||| |
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| T |
22232376 |
aaaagcactgcagagattgaagaggatttgcaatattggcttaggttcatagtttccaattccaaaagagcaggacaacaatgcatgctgccaagtgtag |
22232277 |
T |
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| Q |
181 |
ct |
182 |
Q |
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|| |
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| T |
22232276 |
ct |
22232275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 22232261 - 22232170
Alignment:
| Q |
201 |
acttcgataaaatcaaccaatcatcacagaa---------aacagttgattcaattcagagattgagagttaagtttcaaggcaattttgat |
283 |
Q |
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|||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||||| || ||||| |
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| T |
22232261 |
acttcgataaaatcaaccaatcatcacaaaatctgcagcaaacggtagattcaattcagagattgagagacaagtttcaaggctatgttgat |
22232170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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