View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10662_low_9 (Length: 280)
Name: NF10662_low_9
Description: NF10662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10662_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 3249185 - 3248999
Alignment:
| Q |
18 |
gaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249185 |
gaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttga |
3249086 |
T |
|
| Q |
118 |
atgaactacatgacacagagaaattgcatgaggaagaaaatgaggatgatgttgtgatttctaatcctctttttgggatgaaatcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3249085 |
atgaactacatgacacagagaaattgcatgaggaagaagatgaggatgatgttgtgatttctaatcctctttttgggatgaactcaa |
3248999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 36905445 - 36905596
Alignment:
| Q |
18 |
gaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttga |
117 |
Q |
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||||| ||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||| |
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| T |
36905445 |
gaaaccaccaatactgaaaatgcacaatctaaacaggctgctactgaactacacaacataaccaattcctctgattctcatttacgtcttggaagcttga |
36905544 |
T |
|
| Q |
118 |
atgaactacatgacacagagaaattgcatgaggaagaaaatgaggatgatgt |
169 |
Q |
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|||| |||||| |||||| || ||||||||||||| ||||||||||||||| |
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| T |
36905545 |
atgacctacataacacaggtaacttgcatgaggaaggaaatgaggatgatgt |
36905596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 36905621 - 36905722
Alignment:
| Q |
170 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
269 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
36905621 |
tgtgatttcaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttaacaggttgcaggaagatagtgcaattcat |
36905720 |
T |
|
| Q |
270 |
ct |
271 |
Q |
| |
|
|| |
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|
| T |
36905721 |
ct |
36905722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 3248998 - 3248952
Alignment:
| Q |
226 |
tacataatccttttgacaggttgcaggaagatagtacaattcatctc |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3248998 |
tacataatacttttgacaggttgcaggaagatagtacaattcatctc |
3248952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 28102558 - 28102423
Alignment:
| Q |
18 |
gaaacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttga |
117 |
Q |
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||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28102558 |
gaaaccaccaataatgaaaatacacaatctgaacaggctgctactgaactacacaacataaccaactcccctgattctcatttacgacttggaagcttga |
28102459 |
T |
|
| Q |
118 |
atgaactacatgacacagagaaattgcatgaggaag |
153 |
Q |
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|||| ||||||||||| ||| | ||||||||||||| |
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| T |
28102458 |
atgacctacatgacaccgagtacttgcatgaggaag |
28102423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 28102382 - 28102281
Alignment:
| Q |
170 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
269 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
28102382 |
tgtgattttaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttgatgggttgcaggaagatagtgcaattcat |
28102283 |
T |
|
| Q |
270 |
ct |
271 |
Q |
| |
|
|| |
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|
| T |
28102282 |
ct |
28102281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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