View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10663_low_1 (Length: 365)
Name: NF10663_low_1
Description: NF10663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10663_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 36651511 - 36651172
Alignment:
| Q |
7 |
gaagcagagagataaaccgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactaca |
106 |
Q |
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| T |
36651511 |
gaagcacagagataaaccgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactaca |
36651412 |
T |
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| Q |
107 |
tctgcaattgtggcaaggtctggaatgaagtcacgcaaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattga |
206 |
Q |
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| T |
36651411 |
tctgcaattgtggcaagatctggaatgaagtcacgcgaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattga |
36651312 |
T |
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| Q |
207 |
attacatacatcagcgtctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcggttgtgtctaa |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
36651311 |
attacatacatcagcgtctcctcgttaaaaccgacatgaaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcagttgcgtctaa |
36651212 |
T |
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| Q |
307 |
tgtggtggagtgtggatccaatgataacacttgtgtgaag |
346 |
Q |
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| T |
36651211 |
tgtggtggagtgtggatgcaatgatatcacttgtgtgaag |
36651172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 36642181 - 36642257
Alignment:
| Q |
211 |
catacatcagcgtctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttata |
287 |
Q |
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||||||| |||||||||||| || | || ||||| |||||||||||||| |||||||| |||||||||||||||| |
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| T |
36642181 |
catacattagcgtctcctcgctagacctaacatgaggcatgtgttcctcaaaggatatctcatggttatgagttata |
36642257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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