View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10663_low_2 (Length: 259)
Name: NF10663_low_2
Description: NF10663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10663_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 5961033 - 5960776
Alignment:
| Q |
2 |
atatatgtttacacatagcttatagcagttagaatactaccacatagagggtcataatatcataaaattaaacctgaagagagggaattgatcttaattc |
101 |
Q |
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| T |
5961033 |
atatatgtttacacatagcttatagcagttagtatactaccacatagagggtcataatatcataaaattaaacctgaagagagggaattgatcataattc |
5960934 |
T |
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| Q |
102 |
aaatatattactagttactttccaaaccctttgacaagaagataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaa |
201 |
Q |
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| T |
5960933 |
acatatattactagttactttccaaaccctttgacaagaagataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaa |
5960834 |
T |
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| Q |
202 |
cattgaccatacaacgcatggctctccatccaggaacataggaacgtaaatccttgac |
259 |
Q |
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| T |
5960833 |
cattgaccatacaacgcatggctctccatccaggaacataggaacgtaaatccttgac |
5960776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 5937812 - 5937717
Alignment:
| Q |
141 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaacattgaccatacaacgcatggctctccatccagga |
236 |
Q |
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| T |
5937812 |
agataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagctttaaccaaacaacgattggccctccatccagga |
5937717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 5949003 - 5948909
Alignment:
| Q |
141 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaacattgaccatacaacgcatggctctccatccagg |
235 |
Q |
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| T |
5949003 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccgtctttattggcatcagctttcatcaaacaacgattggctctccatccagg |
5948909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 5954650 - 5954591
Alignment:
| Q |
141 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatca |
200 |
Q |
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| T |
5954650 |
agataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatca |
5954591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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