View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10663_low_3 (Length: 241)
Name: NF10663_low_3
Description: NF10663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10663_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36650971 - 36650749
Alignment:
| Q |
1 |
cgaagaaaatcccagtttggttggctcgcagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgtt |
100 |
Q |
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| T |
36650971 |
cgaagaaaatgccagtttggtcggctcgcagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgtt |
36650872 |
T |
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| Q |
101 |
gatgatttggccgaggttgtggctgcaatgaggggcgtgccttattttttatgtgagatgaacgagctcactggagaaaatagattcattatggatttta |
200 |
Q |
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| T |
36650871 |
gatgatttggccaaggttgtggctgcaatgaggggtgtgccttattttttgcgtgagatgaacgagctcactggagaaaatagtttcattatggatttta |
36650772 |
T |
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| Q |
201 |
caccgagttactcgatcaccctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36650771 |
caccgagttactcgatcaccctt |
36650749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 36642488 - 36642579
Alignment:
| Q |
29 |
cagcccatgtatggcaacccggaaaggttatggaataacataattaatatagccatcaaaatgggtgctgttgatgatttggccgaggttgt |
120 |
Q |
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| T |
36642488 |
cagcctatgtatggaagccccgaaaggttgtggaataacataatcaatatagccatcaaaatgggtcctattgaagatttgaccgaggttgt |
36642579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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