View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_high_1 (Length: 532)
Name: NF10665_high_1
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Original strand, 52630608 - 52631117
Alignment:
| Q |
11 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatcc |
110 |
Q |
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| T |
52630608 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatcc |
52630707 |
T |
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| Q |
111 |
acatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccctgtatctgcttgtccgt |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
52630708 |
acatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccttgtatccgcttgtccgt |
52630807 |
T |
|
| Q |
211 |
ttattgagtgtccgtgtcctctcgctgacaccgcaaa---cttctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
307 |
Q |
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| T |
52630808 |
ttattgagtgtccgtgtcctctcgctgacaccgcaaagtactgctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcg |
52630907 |
T |
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| Q |
308 |
aaccaccgcaatcgtctctcctttgctgcttaacctcccaaaatccaatgaagctgcttctaattcagcggcctccgtgcttacttcaccttcaagtcct |
407 |
Q |
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| T |
52630908 |
aaccaccgcaatcgtctctcctttgctgcttaacctcccaaaatccaatgaagctgcttctaatttagcggcctccgtgcttacttcaccttcaagtcct |
52631007 |
T |
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| Q |
408 |
atgtggaggatctccgttaatgtttgatccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaacaacgttcttga |
507 |
Q |
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| T |
52631008 |
atgtggaggatctccgttaatgtttgatccactgttaatccttcagatacaattatacggcatatggtgaatgtcaacagaatagtaacaacgttcttga |
52631107 |
T |
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| Q |
508 |
tgttgttctt |
517 |
Q |
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| T |
52631108 |
tgttgttctt |
52631117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 17243465 - 17243437
Alignment:
| Q |
12 |
acagacaaatacaagtaatcagtccaaga |
40 |
Q |
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| T |
17243465 |
acagacaaatacaagtaatcagtccaaga |
17243437 |
T |
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