View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_low_3 (Length: 312)
Name: NF10665_low_3
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 36407095 - 36407391
Alignment:
| Q |
1 |
cttcaagagccaaaggaagaccttgagcatattcgactacactttcagacaactccagataaccctctttaggtgcatcttctttgaatgctttttcata |
100 |
Q |
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| T |
36407095 |
cttcaagtgccaaaggaaggcctcgagcatattcaaccacactttcagacaactccacaaaaccctctttaggtgcatcctctttaaatgctttttcaca |
36407194 |
T |
|
| Q |
101 |
aaatagttgaagggattcacttttatttaagattttactctcatacatttcaaacattacagcatgcgatatcaacaggtgcttatccctagttgtaact |
200 |
Q |
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||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
36407195 |
aaaaagatgaagggattcacttttatttaaaattttactctcatacatttcaaacaatacatcatgcgatatcaacaggtgcttatccctagttgtgact |
36407294 |
T |
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| Q |
201 |
ataattctactacctcgaccaaaccattcttggcttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaagaacttttt |
297 |
Q |
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| T |
36407295 |
ataattctactacctcgaccaaaccattcttggcttcctgccaaattctcaagttggcttttagaacttacatcatcaaggacaagaagaacctttt |
36407391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 11124158 - 11124244
Alignment:
| Q |
174 |
aacaggtgcttatccctagttgtaactataattctactacctcgaccaaaccattcttggcttccagccaaattctcaagttggctt |
260 |
Q |
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| T |
11124158 |
aacaagtgcttatctctacttgtgattataactctacttcctggaccaaaccattcttgcttcccagctaaattctccaattggctt |
11124244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 35685849 - 35685787
Alignment:
| Q |
235 |
ttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaagaacttttt |
297 |
Q |
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||||||| |||||||| |||||| | | |||||||| ||| ||||||||||| |||||||||| |
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| T |
35685849 |
ttccagctaaattctctagttggatatcagaacttagatcatcaaggacaaggagaacttttt |
35685787 |
T |
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