View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_low_4 (Length: 300)
Name: NF10665_low_4
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 1392710 - 1392437
Alignment:
| Q |
17 |
acaaggcctcctgaatttcctaaggtattatatattttgcctttaaactatgaagtggggaagnnnnnnncatctaccatctactatttctgtataaacc |
116 |
Q |
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| T |
1392710 |
acaaggcctcctgaatttcctaaggtattatatattttgcctttaaactatgaagtggggaagaaaaaaacatctaccatctactatttctgtataaacc |
1392611 |
T |
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| Q |
117 |
tacctatcactgtttgtcatatcacactgactgatatcaatatttcaatataaatatagtacaatgtaaaaggttagagttaagttcttacaacagctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1392610 |
tacctatcactgtttgtcatatcacactgactgatatcaatatttcaatataaatatagtacaatgtaaaaggttagagttaagttcttacaacagctat |
1392511 |
T |
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| Q |
217 |
agcaccatcatatgagttaagctccttatttgttagagatgacatcatatcaaatgcttggcctgctctctctg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1392510 |
agcaccatcatatgagttaagctccttatttgttagagatgacatcatatcaaatgcttggcctgctctctctg |
1392437 |
T |
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