View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_low_5 (Length: 289)
Name: NF10665_low_5
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 1913610 - 1913463
Alignment:
| Q |
132 |
tatgagtgacgagtcggttaaagtatttatagtgtggaaagagaaatgaaaagagagtacggagttaagaaagtatagtcacgagtttatgactcacgag |
231 |
Q |
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| T |
1913610 |
tatgagtgatgagtcggttaaagtatttatagtgtggaaagagaaatgaaaagagagtacggagttaagaaagtatagtcacgagtttatgactcacgag |
1913511 |
T |
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| Q |
232 |
agtcacgcaaaaaagatagagaaaccagtagtagttagccaaattcat |
279 |
Q |
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| T |
1913510 |
agtcacgcaaaaaagatagagaaaccagtagtagttagccaaattcat |
1913463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1913736 - 1913700
Alignment:
| Q |
5 |
cagcaacttcttcctccgtcgtcgccatattccgatg |
41 |
Q |
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| T |
1913736 |
cagcaacttcttcctccgccgtcgccatattccgatg |
1913700 |
T |
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