View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_low_6 (Length: 270)
Name: NF10665_low_6
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_low_6 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 27827 - 28071
Alignment:
| Q |
16 |
tccaacactctccttgataccttggatagcccgaaaaacctcttccttaacttcaccgttcttttcgtccttgagtttcaagaaactcacacgaaaagca |
115 |
Q |
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| T |
27827 |
tccaacactctccttgataccttggatagcccgaaaaacctcctccttaacttcaccgttcttttcgtccttgagtttcaagaaactcacacgaaaagca |
27926 |
T |
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| Q |
116 |
gtccccagtgaggggtgcgggggaagagttacttcccctgcaatccaatcgacgactaaaaggtcgtcaaggatagggagtgcgaagtttcttacgccgt |
215 |
Q |
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| T |
27927 |
gtccccggtgaaggatgcgggggaagagcaacttcccccgcaatccaatcgatgactaagaggtcgtcgagaatagggagtgcgaagtttcttacgccgt |
28026 |
T |
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| Q |
216 |
tgaggtgggtagggtgagcgttgtatatttgaagatcctcctttg |
260 |
Q |
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| T |
28027 |
tgaggtgggtagggtgagcgttgtatatttgaagatcctcctttg |
28071 |
T |
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