View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10665_low_8 (Length: 268)
Name: NF10665_low_8
Description: NF10665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10665_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 11749145 - 11748978
Alignment:
| Q |
35 |
atgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatatt |
134 |
Q |
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| T |
11749145 |
atgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacataggaagaattcactgcatatt |
11749046 |
T |
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| Q |
135 |
ttggagtgttggactcttccacattagaggtatttccatgaaatttttattgctatggtggtagtaaa |
202 |
Q |
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| T |
11749045 |
ttggagtgttggacacttccacggtagaggtatgtccatgaaatttttattgctatggtggtagtaaa |
11748978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 52011345 - 52011204
Alignment:
| Q |
26 |
tcgagagagatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattca |
125 |
Q |
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| T |
52011345 |
tcgagaaaaatgaattgtcgctttcttgaactacttctgagtgggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattca |
52011246 |
T |
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| Q |
126 |
ctgcatattttggagtgttggactcttccacattagaggtat |
167 |
Q |
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| T |
52011245 |
ctaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 52001471 - 52001339
Alignment:
| Q |
35 |
atgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatatt |
134 |
Q |
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| T |
52001471 |
atgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatatt |
52001372 |
T |
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| Q |
135 |
ttggagtgttggactcttccacattagaggtat |
167 |
Q |
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| T |
52001371 |
ttggaaagttggacaattccatattagaggtat |
52001339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 51988214 - 51988294
Alignment:
| Q |
87 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
167 |
Q |
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|||||||||| |||| |||||||||| |||||||||| | |||||||||| |||||| |||||| ||||||||||| |
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| T |
51988214 |
ggcttaaagattgcttctggttgacagaggaagaatttataaaatattttggaacattggacacttccatattagaggtat |
51988294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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