View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_high_12 (Length: 280)
Name: NF10666_high_12
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 41284175 - 41284421
Alignment:
| Q |
1 |
aggaaactaaagcaattctcaagtggtccaacttctgctataagtaaccgtgtctaattttgtgagtactcactcagttgtgactatctaatgatttcaa |
100 |
Q |
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| T |
41284175 |
aggaaactaaagcaattctcaagtggtccaatttctgctataagtaaccgtgcctaattttgtgagtactcactcagttgtcaccatctaatgatttcaa |
41284274 |
T |
|
| Q |
101 |
aataattgtttctgttccatttgattcgaggacacaagtataaataatatcatgttatgaatcataattaacagtaacatagataatggttgattaaata |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41284275 |
aataattgcttctgttccatttgattcgaggacacaagtataaataatatcatgttatgaat---------------catagataatggttgattaaata |
41284359 |
T |
|
| Q |
201 |
aattaattgatcgcgcctaaagagtggttgagataacatacattgaaaacgaagctcgggag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41284360 |
aattaattgatcgcgcctaaagagtggttgagataacatacattgaaaacgaagctcgggag |
41284421 |
T |
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