View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_high_16 (Length: 250)
Name: NF10666_high_16
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 56454658 - 56454414
Alignment:
| Q |
1 |
atgaacacaataatgtgcattgttaggattaggataaatgataaagtggagtgtttgaattagttagggcaaacaattagttagatgaggaggcttagtt |
100 |
Q |
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| T |
56454658 |
atgaacacaataatgtgcattgttaggattaggataaatgataaagtggagtgtttgaattagttagggcaaacaattagttagatgaggaggcttagtt |
56454559 |
T |
|
| Q |
101 |
atataaatagggaaaaatagtaaatagattcattttctgaatttgattgcggtgcataaaaggagaaattctttgtgaaggggaaacctttggagctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56454558 |
atataaatagggaaaaatagtaaatagattcattttctgaatttgattgcggtgcataaaaggagaaattctttgtgaaggggaaacctttggagctctc |
56454459 |
T |
|
| Q |
201 |
ctattcttaatcattcgttcaataaaactggcctttcttctcact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
56454458 |
ctattcttaatcattcgttcaataaaactggcctttcttttcact |
56454414 |
T |
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