View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_high_5 (Length: 341)
Name: NF10666_high_5
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 53043062 - 53042757
Alignment:
| Q |
1 |
cattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattgtacccctcaaaatccaccgacaaaacacaacacatc |
100 |
Q |
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| T |
53043062 |
cattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattatacccctcaaaatccaccgacaaaacacaacctatc |
53042963 |
T |
|
| Q |
101 |
caacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatatctatcgttactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53042962 |
caacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatatctatcgttaccat |
53042863 |
T |
|
| Q |
201 |
tttccactccattctctcctccccatttctcgccgcaaccgggtcgggttagatccatatccattttcctccaacacaacgacagagtatactagctagc |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
53042862 |
tttccactc--------------catttctcgccgcaaccgggtcgggttagatccatatccattttcctccaacacaac-acagagtata----ctagc |
53042782 |
T |
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| Q |
301 |
taggttgttggttggtgctgttttt |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
53042781 |
taggttgttggttggtgctgttttt |
53042757 |
T |
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