View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10666_high_9 (Length: 287)
Name: NF10666_high_9
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 32468648 - 32468407
Alignment:
| Q |
14 |
aaaagtacaaagtgatataaacaaaacaaattagaatagcaaagtggtcaaagccttgttggagtattacaagtaattcttctatttccatcatcattcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32468648 |
aaaagtacaaagtgatataaacaaaacaaattagaatagcaaagtggtcaaagccttgttggagtattacaactaattcttctatttccatcatcattcc |
32468549 |
T |
|
| Q |
114 |
aaattctctttaccattaggnnnnnnnattttctccattttgagctcacaatgcctcacatgaagcagcatgctcctcactatacattttgaacaccctt |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
32468548 |
aaattctctttaccattagg-ttttttattttctccattttgagctcacaatgcctcacatgaagcaacatgctcctcactatacattttgaacatcctt |
32468450 |
T |
|
| Q |
214 |
ccaatttttctttctcattgcnnnnnnncttttaccattataa |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32468449 |
ccaatttttctttctcattgctttttttcttttaccattataa |
32468407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 3311447 - 3311400
Alignment:
| Q |
14 |
aaaagtacaaagtgatataaacaaaacaaattagaatagcaaagtggt |
61 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3311447 |
aaaagtacaaaatgataaaaacaaaacaaattagagtagcaaagtggt |
3311400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 3319084 - 3319037
Alignment:
| Q |
14 |
aaaagtacaaagtgatataaacaaaacaaattagaatagcaaagtggt |
61 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
3319084 |
aaaagtacaaaatgataaaaacagaacaaattagagtagcaaagtggt |
3319037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University