View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_1 (Length: 635)
Name: NF10666_low_1
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Original strand, 1784730 - 1785336
Alignment:
| Q |
20 |
gacggtctaatctaaacctcttgaaatatttttatatgcatatgaatactctattaacaaacatgaaattaaataacaaatattctattaactctaaaaa |
119 |
Q |
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| T |
1784730 |
gacggtctaacctaaacctcttgaaatatttttatatgcatatgaatactctattaacaaacatgaaattaaataacaaatattctattaactctaaaaa |
1784829 |
T |
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| Q |
120 |
acaccatgttggaattcaagtgtgagtgcctaatttcgcattaattataacttagctaaatgaaaaatatataagagacttgacgcatatatctattatc |
219 |
Q |
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| T |
1784830 |
a-accatgttggaattcaagtgcgagtgcctagtttcgcattaattataacttagttaaatgaaagttatataagagacttgacacatatatctatcatc |
1784928 |
T |
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| Q |
220 |
ttaagattttgggtgtggagatgtgatgttcacgctcttagtggttcaatatattatgttgttgctctatgtgctctctcaa-acttctcaacaagtggt |
318 |
Q |
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| T |
1784929 |
ttaagattttgggtgtggagatgtgatgttcacgctcttagtgattcaatatattatgttgttgctctctgtgctctctcaagacttctcaacaagtggt |
1785028 |
T |
|
| Q |
319 |
atcagagcccttgctcagctggatggggagcgggagtgaatctagatatgatggatccttgtatcaaaggtattattattggtaatggagtcaggtgata |
418 |
Q |
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| T |
1785029 |
atcagagcccttgctcagttggatggggagcgggagtgaatctagatatgatggatccttgtatcaaaggtattattattggtaatggagtcaggtgaca |
1785128 |
T |
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| Q |
419 |
tgttttgtttccgttggtttgtaacggcggtggaaatagttagaatttaagtgtgagtgattcgtctcagatcgactaaaaattaggagaaatgactcgt |
518 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
1785129 |
tgttttgtttccgttggtttgtaacggcggtgcaaatagttggaatttaagtgtgagtaattcgtcctagatcgacaaaaaattaggagaaatgactcgt |
1785228 |
T |
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| Q |
519 |
atacttaattaataccttaagatttttggtgaagttgtggtgtctcataatagtgg-nnnnnnnatcaatagatgtggtgtctctttgtgatttgattta |
617 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1785229 |
atatttaattaataccttaagatttttggtgaagctgtggtgtctcataatagtggttttttttatcaatagatgtggtgtctctttgtgatttgattta |
1785328 |
T |
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| Q |
618 |
atcctttg |
625 |
Q |
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| T |
1785329 |
atcctttg |
1785336 |
T |
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