View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10666_low_13 (Length: 297)
Name: NF10666_low_13
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_13 |
 | |
|
| [»] chr5 (17 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30339727 - 30339434
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30339727 |
gaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcaccttcatataagataagctgagtaagaccacggaaggtagagattgacc |
30339631 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
30339630 |
tcagtaactcattgttacatccctcaacatagaggtctttaagagatggaagacatggcagtccaattttagggcaataggagattgtcaagttagaaag |
30339531 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30339530 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggcgttgtaagtagagtacctccagagatgggaaaaccctcacc |
30339434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30059258 - 30059551
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| || || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30059258 |
gaagtaaggtttttgaacatcccctctgggaaggatgttat---tccttcacccccatttacgaaaagctgagtaagaccacggaaggtagagattgacc |
30059354 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||| ||||||| |
|
|
| T |
30059355 |
tcagtaactcattgttacattccgatacagtgagggatttaagagatggaagacatggcagtccaagtttacggcattcagagatatccaacttagaaag |
30059454 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30059455 |
acaaggaaacatctcccctctttccactttcaataaaccctctatgtttggtaactgatataatacgagttcctccagagatgggaaaaccctcacc |
30059551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30398966 - 30399259
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||| || || || |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30398966 |
gaagtaaggtttttgaacatcccctctgggaaggatgttatt---cctctaccgtaatctagggaaagctcagtaagaccacggaaggtagagattgacc |
30399062 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||| |||||||||||||||| | ||||| |||| |||||| |
|
|
| T |
30399063 |
tcagtaactcattgttacatcccaatacatagagggatttaagagatggaagacatggcactccaagtttagggcaagctgtgattctcaactcagaaag |
30399162 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
30399163 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggcatagtaaatggagttcctccagagatgggaaaaccctcacc |
30399259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30748544 - 30748837
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30748544 |
gaagtaaggtttttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaaggtagagattgacc |
30748640 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||| |
|
|
| T |
30748641 |
tcagtaactcattgttacattcccataaatggagggatttaagagatggaagacatggcagtccaagttcagggcaatcccagatatccaacttagaaag |
30748740 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
30748741 |
acaaggaaacatctcccctctttccactttcaataatccctctatgtttggtagggattttaagttgagttcctctagagatgggaaaacgctcacc |
30748837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 30434723 - 30435016
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30434723 |
gaagtaaggtttttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaaggtagagattgacc |
30434819 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||| |
|
|
| T |
30434820 |
tcagtaactcattgttacgtccatcgacaccgaggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaag |
30434919 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
30434920 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaacccatgtaattcgagtacctccaaagatgggaaagccctcacc |
30435016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 29852200 - 29852493
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || ||||| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
29852200 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattctgaa---accgtcatgtagccaaagctttgtaagaccacggaaggtagagattgacc |
29852296 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| | ||| |||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||| |
|
|
| T |
29852297 |
tcagtaactcattgttacatcccaatacatggagcagtttcagagatggaagacatggcagtccaagttcagggcaatatgagattttcaaattagaaag |
29852396 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29852397 |
acaaggaaatatcttccctctttccactttcaataacccctctatgtttcgtaggcgttgtaatagaagtatctccagagatgggaaaaccctcacc |
29852493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30243574 - 30243281
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || || || | ||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30243574 |
gaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccgaaaccgtgaattagtttaagctgagtaagaccacggaaggtagagattgacc |
30243478 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||| |
|
|
| T |
30243477 |
tcagtaactcattgttacattcccatacaaagaggtctttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaag |
30243378 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
30243377 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtagacaagataattggagtacctctagagatgggaaaaccctcacc |
30243281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30678373 - 30678077
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || || || ||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30678373 |
gaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccgaaaccgttatatagggaaagctgagtaagaccacggaaggtagagattgacc |
30678277 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaag---tttagggcaatcaatgattgtcaaagtaga |
197 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||| |
|
|
| T |
30678276 |
tcagtaactcattgttacatccccatatctcgagttctttaagagatggaagacatggcagtccaagcagtttagggcaattccagatatccaacctaga |
30678177 |
T |
|
| Q |
198 |
aagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30678176 |
aagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtagagaatctaataagagtttctccagagatgggaaaaccctcacc |
30678077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 29871087 - 29871380
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
29871087 |
gaagtaaggtttttgaacatcccctctgggaaggatgttat---tccttcaccgtcacttagggcaagctgagtaagaccacaaaaggtagagattgacc |
29871183 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||| | || |||| ||||||| |
|
|
| T |
29871184 |
tcagtaactcattgttacatggatcggcaacgaggtctttaagagatggaagacatggcagtccaattttagggcatttccaaatatccaaactagaaag |
29871283 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
29871284 |
acaaggaaacatctcccctctttcaactttcaataaaccctctatgtttggtaacttatataatacgagttcctccagagatgggaaaatcctcacc |
29871380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 30482306 - 30482556
Alignment:
| Q |
2 |
aagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacct |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||| || |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30482306 |
aagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcaccctccattagggtaagctgagtaagaccacggaaggtagagattgacct |
30482402 |
T |
|
| Q |
102 |
cagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagt-agaaag |
200 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| || ||||||||||||| ||||||||||||||||| |||||| |||| || |||| |||||| |
|
|
| T |
30482403 |
cagtaactcattgttacatccatccacatagaggccttcaagagatggaagagatggcagtccaagtttatggcaatatgagatt-tccaagtaagaaag |
30482501 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtagg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30482502 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttcgtagg |
30482556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 75 - 297
Target Start/End: Original strand, 4380630 - 4380852
Alignment:
| Q |
75 |
aagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttaggg |
174 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| | | ||| ||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4380630 |
aagaccacgaaaggtagagattgacctcagtaactcattgttacatccctcaacaacgaggtgtttaagagatggatgacatggcagtccaagtttaggg |
4380729 |
T |
|
| Q |
175 |
caatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacct |
274 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | | |||| ||||||||| |
|
|
| T |
4380730 |
caattctagatatccaagttagaaagacaaggaaacaactcccctctttccactttcaataacccctttatgtttggtagacaatataattcgagtacct |
4380829 |
T |
|
| Q |
275 |
ccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4380830 |
ccagagatgggaaaaccctcacc |
4380852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 30205481 - 30205701
Alignment:
| Q |
74 |
taagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagg |
173 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||||||||| | ||||| | ||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
30205481 |
taagaccacaaaagctagagattgacctcagcaactcattgttacatcccaatacatctaggtttttaagagatacaagacatggcagtccaagtttagg |
30205580 |
T |
|
| Q |
174 |
gcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacc |
273 |
Q |
| |
|
|||| ||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |
|
|
| T |
30205581 |
gcaaaaggagatggttaaacgagaaagacaaggaaacatctcacctctttccactttcaataacccttctaagtttggtaggatttctaatatgagtacc |
30205680 |
T |
|
| Q |
274 |
tccagagatgggaaaaccctc |
294 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
30205681 |
tccagagatgggaaaatcctc |
30205701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 297
Target Start/End: Complemental strand, 30714502 - 30714343
Alignment:
| Q |
138 |
tttaagagatggaagacatggcagtccaagtttagggcaatcaat-gattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30714502 |
tttaagagatggaagacatggcagtccaagtttagggcaa-caatcgattaccaatttagaaagagaaggaaacatctcccctctttccactttcaataa |
30714404 |
T |
|
| Q |
237 |
cccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
|||| |||||||| |||| | |||| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
30714403 |
ccccactatgtttcgtagacaagataattcgagtatctccagagaggggaaaaccctcacc |
30714343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 297
Target Start/End: Complemental strand, 29710042 - 29709818
Alignment:
| Q |
73 |
gtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttag |
172 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||| | | ||| ||||| | ||||||| |||||||||| |||| ||||||||| |
|
|
| T |
29710042 |
gtaagaccacatgaggtagagattgatctcagtaactcattgttacatcccgaaacatcgaggtctataagagacggaagacatgacagttcaagtttag |
29709943 |
T |
|
| Q |
173 |
ggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtac |
272 |
Q |
| |
|
| | ||| ||||| ||||| |||||||||||| |||| |||||||||| |||| ||||||||||| |||||| | || ||||| | |||||| |
|
|
| T |
29709942 |
tgaagagggcaattttcaaaatagaaggacaaggaaacacctcctctctttccacattcactaacccctctaagtttggcaataaatctaacatgagtac |
29709843 |
T |
|
| Q |
273 |
ctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||| | | ||||| ||||||| |
|
|
| T |
29709842 |
ctccagaaaagcgaaaaacctcacc |
29709818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 30474363 - 30474473
Alignment:
| Q |
91 |
gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtca |
190 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||| |||| |||||| |||||||| ||||||| ||||||||||||||||||| || |||| |
|
|
| T |
30474363 |
gagattgatctcagtaactcattgttacatccaaatacaatgaggtctttaagggatggaaggcatggcaacacaagtttagggcaatcaataatggtca |
30474462 |
T |
|
| Q |
191 |
aagtagaaaga |
201 |
Q |
| |
|
|| |||||||| |
|
|
| T |
30474463 |
aattagaaaga |
30474473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 30203119 - 30203280
Alignment:
| Q |
72 |
agtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagttta |
171 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||| ||| ||||| | |||||||||||| |||| ||||||| |
|
|
| T |
30203119 |
agtaagaccatagaagctagagatcgacctcagtaactcattgttacattcatttacataaaggtttttaacatatggaagacatgacagttgaagttta |
30203218 |
T |
|
| Q |
172 |
gggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaa |
233 |
Q |
| |
|
||| || ||| ||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30203219 |
gggtaaaaggcgatatccaattgaaaaagacaaggaaacatctcctctctttccactttcaa |
30203280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 30429934 - 30430022
Alignment:
| Q |
89 |
tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaa |
177 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||| ||| ||||| ||||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
30429934 |
tagagattgactccagtaactcattgttacatccatctacaatgagttctttaaaagatgaaaggcatggcaacccaagtttaaggcaa |
30430022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 20297808 - 20297512
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||| |||| ||||| ||||||||||||||| ||||||||||| | |
|
|
| T |
20297808 |
gaagtaaggtttttgaacatcccatctgggaaggatgttattatttcttcactgtcaagtagggaaagctgagtaagaccacggaaagtagagattgatc |
20297709 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||| ||||||||||||||| | |||| |||| ||||||| |
|
|
| T |
20297708 |
tcagtaactcattgttacatggatcgacatcgagggatttaagagatggaagacatggcattccaagtttagggcatttggagattttcaacttagaaag |
20297609 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20297608 |
acaaggaaacatctcccctctttccactttcaataacccctctatgttttgtagacaaaataagtcgagtacctccagagatgggaaaaccctcacc |
20297512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26706233 - 26706526
Alignment:
| Q |
1 |
gaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||| | || ||||||| |||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26706233 |
gaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccttcgccgttatatagggtaagctcagtaagaccacgaaaggtagggattgacc |
26706329 |
T |
|
| Q |
101 |
tcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||| |||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||| |
|
|
| T |
26706330 |
tcagtaactcattgttacatcccgaaacattgagggatttaagagatggaagacatggcagtcctagcttagggcaatagtatattgtcaaacgagaaag |
26706429 |
T |
|
| Q |
201 |
acaaggaaacatctcccctctttccactttcaataacccctctatgtttggtaggaattctaatacgagtacctccagagatgggaaaaccctcacc |
297 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||| |
|
|
| T |
26706430 |
acaaggaaacacctttcctctttccactttcaataacccctctatgtttggtaactcatataagtggagtaccttcagagatgggaaaaccctcacc |
26706526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 7582796 - 7582681
Alignment:
| Q |
138 |
tttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataac |
237 |
Q |
| |
|
||||| |||||||||||| || ||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
7582796 |
tttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcctttttttccactttcaacaac |
7582697 |
T |
|
| Q |
238 |
ccctctatgtttggta |
253 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
7582696 |
ccctctaagtttggta |
7582681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 7098401 - 7098563
Alignment:
| Q |
89 |
tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgt |
188 |
Q |
| |
|
||||||||||| |||| | || ||| |||||||||| |||| |||| | ||| |||||||||||| || ||| ||||||||||||||| |||| |
|
|
| T |
7098401 |
tagagattgacttcagcatcttattattacattcatctacatagaggtctctaacagatggaagacacggaagttcaagtttagggcaattgtcgatttc |
7098500 |
T |
|
| Q |
189 |
caaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttgg |
251 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||||||| | ||||||| |||||| |
|
|
| T |
7098501 |
caaaatagaaagacaaggaaacgtctcatctctttccactttcaacagtccctctaagtttgg |
7098563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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