View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_15 (Length: 284)
Name: NF10666_low_15
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 2133921 - 2134196
Alignment:
| Q |
9 |
gaagcagagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagata |
108 |
Q |
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| T |
2133921 |
gaagcatagagtggaagaaaatcaagtgtgaagcatctaagggtgtttgggttagtgtgtttcaaggagatacctgatgctaggaggatgttagaagata |
2134020 |
T |
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| Q |
109 |
aaagtgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaa |
208 |
Q |
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| T |
2134021 |
aaagtgaaagcatggagctcatatggtatcattcaactggtgtctatatgttgtatataaggctagtcataccattgaaagaaattggagtagaaaccaa |
2134120 |
T |
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| Q |
209 |
ctcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgttttgcca |
284 |
Q |
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| T |
2134121 |
ctcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttattcctaataatgtgttttgcca |
2134196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 2073286 - 2073184
Alignment:
| Q |
178 |
taccattgaaagaaattggagtagaaaccaactcttgcaagtaaaatgcccattgaaattaggcttgtgataccatagctggttgttcctaataatgtgt |
277 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2073286 |
taccattgaaagtaattggagtagaaaccaactcttgtaagtaaaatgtccattgaaattaggattgtgataccatagctggttgttcctaataatgtgt |
2073187 |
T |
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| Q |
278 |
ttt |
280 |
Q |
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| T |
2073186 |
ttt |
2073184 |
T |
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