View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_18 (Length: 277)
Name: NF10666_low_18
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 17917456 - 17917205
Alignment:
| Q |
19 |
tgaacacttttgtattgattgttcttttcatcaactctgtcatttcttccattgctctgttgcttatcgatgttgtatctgatgttctgaccaccacatc |
118 |
Q |
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| T |
17917456 |
tgaacacctttgtattgattgttcttttcatcaactctatcatttcttccattgctctgttgcttatcaatgttgtatctgatgttctgaccaccacctc |
17917357 |
T |
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| Q |
119 |
tagatctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctaagaaattctcatcatctgcaatgtctccatatgc |
218 |
Q |
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| T |
17917356 |
tagatctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctgagaaattctcatcatctgcaatgtctccatatgc |
17917257 |
T |
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| Q |
219 |
ctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctca |
270 |
Q |
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| T |
17917256 |
ctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctca |
17917205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 48798900 - 48798653
Alignment:
| Q |
22 |
acacttttgtattgattgttcttttcatcaactctgtcatttcttccattgctctgttgcttatcgatgttgtatctgatgttctgaccaccacatctag |
121 |
Q |
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|||| ||||||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
48798900 |
acacctttgtattggttgttcttttcatcaattctgtcattctttccattgttatgttgcttatcaatgttgtatctgatgttctgaccaccacctctag |
48798801 |
T |
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| Q |
122 |
atctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctaagaaattctcatcatctgcaatgtctccatatgcctc |
221 |
Q |
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| T |
48798800 |
atctcctacttacctgtttcatcatcatattgaactgcctttcaagtaaaactaaattctctgagaaataatcatcatctacaatgtctccatatgcctc |
48798701 |
T |
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| Q |
222 |
ttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798700 |
ttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctc |
48798653 |
T |
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