View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_19 (Length: 258)
Name: NF10666_low_19
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 7025629 - 7025868
Alignment:
| Q |
19 |
cagagaatgtaaggaattatagtactgatggatggatagaaggtttgtttggattgatttatttaagcttatctggctgcataacaatttgagactgttt |
118 |
Q |
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| T |
7025629 |
cagagaatgtaaggaattatagtactgatggatggatagaaggtttgtttggattgatttatttaagcttatctggctgcataacaatttgagactgttt |
7025728 |
T |
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| Q |
119 |
gggagagcttatggaaagcttattacatgtcttctttgtttgaatttgaaccaatgacctccaactccttatcatgtagctcataccagttgagctacgc |
218 |
Q |
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| T |
7025729 |
gggagagcttatggaaagcttattacatgtcttctttgtttgaatttgaaccaatgacctccaactccttatcatgtagctcataccagttgagctacgc |
7025828 |
T |
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| Q |
219 |
aacacctcatcttattacatttctataagttgttttttac |
258 |
Q |
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| T |
7025829 |
aacacctcatcttattacatttctataagttgttttttac |
7025868 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 36472652 - 36472713
Alignment:
| Q |
163 |
tttgaaccaatgacctccaactccttatcatgtagctcataccagttgagctacgcaacacc |
224 |
Q |
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| T |
36472652 |
tttgaacccaggacctccaactccttatcccttagctcagaccagttgagctacccaacacc |
36472713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 10429885 - 10429943
Alignment:
| Q |
163 |
tttgaaccaatgacctccaactccttatcatgtagctcataccagttgagctacgcaac |
221 |
Q |
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| T |
10429885 |
tttgaaccaaagacctcctactccttatcccttagctcaaaccagttgagctacccaac |
10429943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 15646854 - 15646813
Alignment:
| Q |
175 |
acctccaactccttatcatgtagctcataccagttgagctac |
216 |
Q |
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| T |
15646854 |
acctccaactccttaacatttagctcaaaccagttgagctac |
15646813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 24838666 - 24838738
Alignment:
| Q |
58 |
aaggtttgtttggattgatttatttaagcttatctggctgcat-aacaattt-gagactgtttgggagagctt |
128 |
Q |
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| T |
24838666 |
aaggcttgtttggattgagttatttaagcttatccggtggcataaacactttcgagactgtttgggggagctt |
24838738 |
T |
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