View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_20 (Length: 251)
Name: NF10666_low_20
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_20 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 6683 - 6768
Alignment:
| Q |
62 |
tggtacaaatgaaatattcaatccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataactccttgt |
147 |
Q |
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| T |
6683 |
tggtacaaataaaatattcaatccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataactccttgt |
6768 |
T |
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Target: scaffold0186; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6560 - 6627
Alignment:
| Q |
1 |
taagcatataaagttgcataaaatgttgctaaagggaatggactttgcatgacagagcatgtggtaca |
68 |
Q |
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| T |
6560 |
taagcatataaagttgcataaaatgttgctaaagggaatggactttgcatgacagagcatgtggtaca |
6627 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 50615559 - 50615426
Alignment:
| Q |
1 |
taagcatataaagttgcataaaatgttgctaaagggaatggactttgcatgacagagcatgtggtacaaatgaaatattcaa-tccttgttcgaatgaac |
99 |
Q |
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| T |
50615559 |
taagcata-aaagttggataaaatgttgctcaagggaatagactttgtatgacagagtaggtggtacaa--gtaatattcaactctgtattagaacgaac |
50615463 |
T |
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| Q |
100 |
tagatatgtatcttcacatttgtgaaaatcgtcaaaa |
136 |
Q |
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| T |
50615462 |
tagatattaatctacacatttgtggaaattgtcaaaa |
50615426 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 112740 - 112820
Alignment:
| Q |
62 |
tggtacaaatgaaatattcaa-tccttgttcgaatgaactagatatgtatcttcacatttgtgaaaatcgtcaaaataact |
141 |
Q |
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| T |
112740 |
tggtacaagtaaaatattcaactccttgttagaatgaactagagatttatctacatatttttaaaaatcgtcaaaagaact |
112820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 112627 - 112677
Alignment:
| Q |
1 |
taagcatataaagttgcataaaatgttgctaaagggaatggactttgcatg |
51 |
Q |
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| T |
112627 |
taaggatataacgttagataaaatgttgctaaagggaatggagtttgcatg |
112677 |
T |
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