View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_23 (Length: 249)
Name: NF10666_low_23
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 13871238 - 13871154
Alignment:
| Q |
79 |
aatttgacagtgtgaataaattcagtaagtatatgatttgttacttcataggtgctactgtgaacttcaaagaatgaaaatttca |
163 |
Q |
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| T |
13871238 |
aatttgacagtgtgaataaattcagtaagtatatgatttgttacttcataggtgctactgtgaacttcaaagaatgaaaatttca |
13871154 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 13870734 - 13870665
Alignment:
| Q |
166 |
ctcaatgtcattttcccgcctcttctcctctatcaaagccaccgtacctgcattgtttcgctgccactcc |
235 |
Q |
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| T |
13870734 |
ctcaatggcattttcccgcctcttctcctctatcaaagccaccgtaactgcattgattcgccgccactcc |
13870665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13871300 - 13871253
Alignment:
| Q |
1 |
aaattttgcttgtaaatttacttagagacatattatctaaaaactatc |
48 |
Q |
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| T |
13871300 |
aaattttgcttgtaaatttacttagagacatattatctataaactatc |
13871253 |
T |
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