View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10666_low_25 (Length: 241)

Name: NF10666_low_25
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10666_low_25
NF10666_low_25
[»] chr5 (17 HSPs)
chr5 (5-190)||(30435080-30435265)
chr5 (5-198)||(30748901-30749094)
chr5 (1-197)||(30243025-30243221)
chr5 (4-224)||(30714060-30714280)
chr5 (1-197)||(29871440-29871636)
chr5 (1-197)||(30482658-30482854)
chr5 (8-190)||(29852560-29852742)
chr5 (1-224)||(30059611-30059834)
chr5 (4-198)||(30677820-30678014)
chr5 (1-197)||(30399319-30399515)
chr5 (8-197)||(30339178-30339367)
chr5 (82-212)||(17418807-17418937)
chr5 (5-197)||(30205771-30205963)
chr5 (1-92)||(4380912-4381003)
chr5 (148-190)||(30474773-30474815)
chr5 (119-182)||(30522299-30522362)
chr5 (119-182)||(30562639-30562702)
[»] chr4 (1 HSPs)
chr4 (4-195)||(20297258-20297449)
[»] chr7 (1 HSPs)
chr7 (1-197)||(26706586-26706782)
[»] chr1 (2 HSPs)
chr1 (142-186)||(7582395-7582439)
chr1 (73-204)||(7098738-7098869)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 30435080 - 30435265
Alignment:
5 agttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatcc 104  Q
    |||||||| |||||||||||||||| || | |||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||| ||||    
30435080 agtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattatcc 30435179  T
105 aacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctca 190  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||    
30435180 aacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttcgagtaattgctca 30435265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 30748901 - 30749094
Alignment:
5 agttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatcc 104  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||||| ||||    
30748901 agtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattatcc 30749000  T
105 aacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaac 198  Q
    |||||||||||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||    
30749001 aacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaac 30749094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30243221 - 30243025
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||||||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||     
30243221 ttccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaagaatt 30243122  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    |||||||||||||| |||||||| |||||| || |||| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
30243121 atccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa 30243025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 30714280 - 30714060
Alignment:
4 cagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatc 103  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||||||  |||||||    ||||  |||||||| |||||||||||||||||| |||    
30714280 cagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattatc 30714181  T
104 caacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaacag 203  Q
    ||||||||||| ||||||||||||||| |||||||   |||||| |||||||||||||||||||||||  |||| |||||||||||| ||||||||||||    
30714180 caacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaacaacag 30714081  T
204 gggtttttggaattccttgtt 224  Q
    |||| ||||||||||||||||    
30714080 gggtctttggaattccttgtt 30714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29871440 - 29871636
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||| | |||||||| |  ||||| |||||||||||||||||||||||||||     
29871440 ttccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataatt 29871539  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    |||||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||||||||||  |||| |||||||||||| ||||||    
29871540 atccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaa 29871636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 30482658 - 30482854
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||   |     
30482658 ttccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaaggctt 30482757  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    |||||||||||||||||||| ||||||| | |||||||   |||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||    
30482758 atccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaa 30482854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 29852560 - 29852742
Alignment:
8 tttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatccaac 107  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||   | |||||||    
29852560 ttttttagatatggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaac 29852659  T
108 ttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctca 190  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||||    
29852660 ttggtaacgataatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca 29852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30059611 - 30059834
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||| ||||| | |||||||||| ||| |||| || |||||||||||| ||  || |||  |  ||||| |||||||| ||||||||||||||||||     
30059611 ttccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaataatt 30059710  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaa 200  Q
    ||||||||||| || |||||||| |||||| || |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
30059711 atccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaa 30059810  T
201 caggggtttttggaattccttgtt 224  Q
    ||||| | ||||||||||||||||    
30059811 cagggttctttggaattccttgtt 30059834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 30678014 - 30677820
Alignment:
4 cagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatc 103  Q
    |||| |||| |||||||||||||||| | || |||||||||||||||||| |||||| | |  ||||| ||||||||||||||||||||||||||| |||    
30678014 cagtctttttagagatggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattatc 30677915  T
104 caacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaac 198  Q
    ||||||||||||||||||| ||||||| |||||||   |||||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||    
30677914 caacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaac 30677820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 30399319 - 30399515
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||||||||| ||||| |||||||||| || | || |||| ||||||| ||  |||||||||| ||||| |||||||| ||||||||||||||||||     
30399319 ttccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaataatt 30399418  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    |||||||||||||| |||||||| |||||| ||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||| | ||||||    
30399419 atccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagcacttcgagtacttgctgagcactaa 30399515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 30339367 - 30339178
Alignment:
8 tttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatccaac 107  Q
    ||||| |||||||||||||||| |||| || ||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||   | |||||||    
30339367 ttttttagagatggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaaggcttatccaac 30339268  T
108 ttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    ||||||||||||||||||||||| ||||||    |||| | |||||||||||||||||||||||  |||| || ||||||||| ||||||    
30339267 ttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaa 30339178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 17418937 - 17418807
Alignment:
82 taaattactaagaataatcatccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagt 181  Q
    |||||||||||||||| | ||||||||||||||| ||| ||| |||||| || |||| | |||||||||||||||||||||||||||||| |||||||||    
17418937 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 17418838  T
182 acttgctcaacactaacaacaggggtttttg 212  Q
    | ||||||| ||||||||| |||||| ||||    
17418837 agttgctcagcactaacaataggggtctttg 17418807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 30205771 - 30205963
Alignment:
5 agttttttcagagatggtagtttactaagtgacggaagccgcaca-atttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatc 103  Q
    |||||||||| |||| ||||||||| || |||||||||||||||| ||||| |  ||||||||||||  ||||| || ||||||||| |||||| | |||    
30205771 agttttttcaaagattgtagtttaccaaatgacggaagccgcacacatttc-tcacaattccaaagtacaagagcaactaaattactgagaatacttatc 30205869  T
104 caacttggtaacgataatccttcatag---caatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    |||||||||||  ||||||  | ||||   ||| ||||   ||| | |||||||||||||||||||||||| ||||||| || |||||||| |||||    
30205870 caacttggtaagaataatctgttatagtgacaaattat---caacctcttgagatttgagtgaggttgaagcacttcaaatagttgctcaaaactaa 30205963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4380912 - 4381003
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaa 92  Q
    ||||| |||||| ||||||| |||||||| |||||||||||||||||||| || |||||||   ||||||| ||||||||||||||||||||    
4380912 ttccaatttttttagagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 30474773 - 30474815
Alignment:
148 cttgagatttgagtgaggttgaagaacttcaagtacttgctca 190  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
30474773 cttgagatttgagtgaggttgaagcatttcaagtacttgctca 30474815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 30522362 - 30522299
Alignment:
119 aatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagta 182  Q
    ||||| ||||||| || ||| | ||||  |||||||||||||||||||||||| ||||||||||    
30522362 aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 30562702 - 30562639
Alignment:
119 aatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagta 182  Q
    ||||| ||||||| || ||| | ||||  |||||||||||||||||||||||| ||||||||||    
30562702 aatccgtcatagccatgtattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 20297449 - 20297258
Alignment:
4 cagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatcatc 103  Q
    ||||||||| |||||||||||||||| || | |||||||| ||||||||||||||||||||  ||||| || ||||| |||||||||||||||||| |||    
20297449 cagtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaataattatc 20297350  T
104 caacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacact 195  Q
    |||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||| ||||    
20297349 caacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcgagtactttctcagcact 20297258  T

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Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 26706586 - 26706782
Alignment:
1 ttccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataatc 100  Q
    |||||||||||  |||||||||||||||| |||| ||||||||||||||| ||  ||||||| || ||||| |||||||| |||||||||||||||| |     
26706586 ttccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaatactt 26706685  T
101 atccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaa 197  Q
    | |||||||||||| |||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||    
26706686 acccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaa 26706782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 7582439 - 7582395
Alignment:
142 caagcacttgagatttgagtgaggttgaagaacttcaagtacttg 186  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||    
7582439 caagctcttgagatttgtgtgaggttgaagcacttcaagtacttg 7582395  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 7098738 - 7098869
Alignment:
73 aagagaaattaaattactaagaataatcatccaacttggtaacgataatccttcatagcaatttatatccaagcacttgagatttgagtgaggttgaaga 172  Q
    ||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| ||| | ||||| |||||||||||  |||||||||||     
7098738 aagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagc 7098837  T
173 acttcaagtacttgctcaacactaacaacagg 204  Q
    ||||||| |||||| ||| |||| | ||||||    
7098838 acttcaattacttgatcatcactgataacagg 7098869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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