View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_26 (Length: 241)
Name: NF10666_low_26
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7025923 - 7026146
Alignment:
| Q |
1 |
tgactttattagcttatacataaacacttaattaagttatttatccgggacatagtgtttgcttggatgaacttctttgaactcatctacttgcacaaac |
100 |
Q |
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| T |
7025923 |
tgactttattagcttatacataagcaattaattaagttgtttatccaggacatagtgtttgcttggattaacttctttgaactcatctacgtgtacaaac |
7026022 |
T |
|
| Q |
101 |
acttatcaaactgtttgtgagtgctaataaaaacaacataagacatgtctataagttgtttttctgcttatgaccataagctctatgtgatagcttatga |
200 |
Q |
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| T |
7026023 |
acttatcaaactgtttgtgagtgctaataaaaacaacataagacatgtctataagttgtttttctgcttatgaccataagctctatgtgatagcttatga |
7026122 |
T |
|
| Q |
201 |
aaaccaacttataccttatataag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7026123 |
aaaccaacttataccttatataag |
7026146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 18704038 - 18704116
Alignment:
| Q |
143 |
acatgtctataagttgtttttctgcttatgaccataagctctatgtgatagcttatgaaaaccaacttataccttatataa |
223 |
Q |
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| T |
18704038 |
acatgtctataagttgtttt-cagcttatttccataagatctttgtaatagcttatgaaaa-caacttatagcttatataa |
18704116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 13508484 - 13508448
Alignment:
| Q |
10 |
tagcttatacataaacacttaattaagttatttatcc |
46 |
Q |
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| T |
13508484 |
tagcttaaacataaacacttaattaagttgtttatcc |
13508448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 21782687 - 21782723
Alignment:
| Q |
10 |
tagcttatacataaacacttaattaagttatttatcc |
46 |
Q |
| |
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| T |
21782687 |
tagcttaaacataaacacttaattaagttgtttatcc |
21782723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 7282970 - 7282934
Alignment:
| Q |
10 |
tagcttatacataaacacttaattaagttatttatcc |
46 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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|
| T |
7282970 |
tagcttatacataaacacttaattaaattatttatcc |
7282934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 33894728 - 33894676
Alignment:
| Q |
110 |
actgtttgtgagtgctaataaaaacaacataagacatgtctataagttgtttt |
162 |
Q |
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|||||||||||| ||| || |||||| |||| |||||||| |||||||||||| |
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| T |
33894728 |
actgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgtttt |
33894676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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