View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_27 (Length: 240)
Name: NF10666_low_27
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41345068 - 41344846
Alignment:
| Q |
1 |
tgggcagattcaatttggaacgctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41345068 |
tgggcagattcaatttggaacgctgccataccgccttctgtttcttttatttattggaggcttcgtcacggtaaaatgcccacaaatgaaaatcttaaac |
41344969 |
T |
|
| Q |
101 |
gacgtggttgtattgtagtgtcagtttgcaattaatgcttgacaacatatgaatcttctgaacatctttttgttcgctgcccctttgttgttcgcctttg |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41344968 |
gacgtggttgtattgtggtatcagtttgcaatttatgcttgacaacatatgaatcttctgaacatctttttgttcgctacccctttgttgttcgcctttg |
41344869 |
T |
|
| Q |
201 |
gaattggattgggaataagctta |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
41344868 |
gaattggattgggaataagctta |
41344846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29304160 - 29303939
Alignment:
| Q |
1 |
tgggcagattcaatttggaacgctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaac |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||| ||||||| |
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| T |
29304160 |
tgggcggattcaatttggaatgctgccatttcgccttctgtttcttttatttattggaggattcgtcacggtaaaatgcccatagatgaaaaccttaaac |
29304061 |
T |
|
| Q |
101 |
gacgtggttgtattgtagtgtcagtttgcaattaatgcttgacaacatatgaatcttctgaacatctttttgttcgctgcccctttgttgttcgcctttg |
200 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
29304060 |
gacgtggttgtattgtagtgtcagtttgctgtttatgcttgacaacagatgaatcttctgaacatctttttg-tcgctgctcctttgtttttcgcctttg |
29303962 |
T |
|
| Q |
201 |
gaattggattgggaataagctta |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
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| T |
29303961 |
gaattggatagggaataagctta |
29303939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 22523989 - 22523916
Alignment:
| Q |
22 |
gctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatct |
95 |
Q |
| |
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|||||||||||| |||| ||||||| || |||||| |||||| | || ||||||||||||| |||||||||| |
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| T |
22523989 |
gctgccataccgccttccatttctttcatctattggcggcttcattaccgtaaaatgcccacggatgaaaatct |
22523916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10609528 - 10609317
Alignment:
| Q |
1 |
tgggcagattcaatttggaacgctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaac |
100 |
Q |
| |
|
||||| ||| ||||||||| ||||||||| ||| |||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| | |
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| T |
10609528 |
tgggcggatgcaatttggaccgctgccatcccgccttccacttcttttatttattggaggcttcatcacggaaaaatgcccacagatgaaaatcttagaa |
10609429 |
T |
|
| Q |
101 |
gacgtggttgtattgtagtgtcagtttgcaattaatgcttgacaacatatgaatcttctgaacatctttttgttcgctgcccctttgttgttcgcctttg |
200 |
Q |
| |
|
| |||||||||||||| |||||||| |||| || |||||||| | || ||||||| || |||||||||| || || |||||||||| || ||||| |
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| T |
10609428 |
gtcgtggttgtattgtcgtgtcagtatgcagtttatgcttgaaagcagatgaatcatcgaaacatcttttccttacttgtacctttgttgtccgtctttg |
10609329 |
T |
|
| Q |
201 |
gaattggattgg |
212 |
Q |
| |
|
| |||||||||| |
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|
| T |
10609328 |
ggattggattgg |
10609317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 20938000 - 20937892
Alignment:
| Q |
22 |
gctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaacgacgtggttgtattgtagtgt |
121 |
Q |
| |
|
|||||||||||| |||| ||||||| || |||||| |||||| | || ||||||||||||| |||||||||| || ||||||||||| || |||| |
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| T |
20938000 |
gctgccataccgccttccatttctttcatctattggcggcttcattaccgtaaaatgcccacggatgaaaatctccgtcgccgtggttgtatcgttgtgt |
20937901 |
T |
|
| Q |
122 |
cagtttgca |
130 |
Q |
| |
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| ||||||| |
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|
| T |
20937900 |
ccgtttgca |
20937892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 3409253 - 3409381
Alignment:
| Q |
43 |
tcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaacgacgtggttgtattgtagtgtcagtttgcaattaatgcttga |
142 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||| |||||||| |||| ||||||| | | ||||| || ||||| ||||| |||| |||| |||||||| |
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| T |
3409253 |
tcttgtatttattggaggcttcatcatggtaagatgcccacggatgataatcttagaagtcgtggctgcattgttgtgtcgatttgtaatttatgcttga |
3409352 |
T |
|
| Q |
143 |
caacatatgaatcttctgaacatcttttt |
171 |
Q |
| |
|
|| ||||| ||||||| || |||||| |
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| T |
3409353 |
aaattgatgaaacttctgagcaccttttt |
3409381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 33235499 - 33235318
Alignment:
| Q |
42 |
ttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaacgacgtggttgtattgtagtgtcagtttgcaattaatgcttg |
141 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| || ||||||| |||| ||||||||||| | || ||||||| |
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|
| T |
33235499 |
ttcttttatttattggaggcttcatcacggtaaaatgcccactgatgaaaatcttagacactgtggttgctttgtggtgtcagtttgtagtttatgcttg |
33235400 |
T |
|
| Q |
142 |
acaacatatgaatcttctgaacatctttttgttcgctgcccctttgttgttcgcctttggaattggattgggaataagctta |
223 |
Q |
| |
|
| || |||||||||| || ||||||||| |||| |||| |||||| ||| |||||| |||||||||| | |||||||| |
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| T |
33235399 |
atttcagatgaatcttccgatcatctttttcttcgttgccaatttgttactcggctttgggattggattggtagtaagctta |
33235318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 25972199 - 25972090
Alignment:
| Q |
22 |
gctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaacgacgtggttgtattgtagtgt |
121 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||| |||||| |||| | ||||||||||| |||||||||| || ||||| ||||| ||||||| |
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| T |
25972199 |
gctgccataccgccttccatttctttcatttattggcggcttcatcaccgaaaaatgcccacggatgaaaatctccgtcgccgtggatgtatcgtagtgt |
25972100 |
T |
|
| Q |
122 |
cagtttgcaa |
131 |
Q |
| |
|
| |||||||| |
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|
| T |
25972099 |
ccgtttgcaa |
25972090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 20425284 - 20425378
Alignment:
| Q |
73 |
aaaatgcccacaaatgaaaatcttaaacgacgtggttgtattgtagtgtcagtttgcaattaatgcttgacaacatatgaatcttctgaacatct |
167 |
Q |
| |
|
||||||||||| |||||||||||| | | ||||| | | |||| ||||| || ||||||| |||||||| | |||||||||| || |||||||| |
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|
| T |
20425284 |
aaaatgcccactgatgaaaatcttagaagtcgtggctatgttgtcgtgtccgtatgcaatttatgcttgaaagcatatgaatcatcggaacatct |
20425378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 20375113 - 20374944
Alignment:
| Q |
1 |
tgggcagattcaatttggaacgctgccataccgtcttctgtttcttttatttattggaggcttcgtcacagtaaaatgcccacaaatgaaaatcttaaac |
100 |
Q |
| |
|
||||| ||| ||||||||| |||||| || ||| |||| ||||||||||||||||||||||| ||| | ||||||||||| |||||||||||| | |
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|
| T |
20375113 |
tgggcggatgcaatttggagcgctgctatcccgccttccacttcttttatttattggaggcttcatcaaggaaaaatgcccactgatgaaaatcttagaa |
20375014 |
T |
|
| Q |
101 |
gacgtggttgtattgtagtgtcagtttgcaattaatgcttgacaacatatgaatcttctgaacatctttt |
170 |
Q |
| |
|
| |||||||||||||| |||||||| |||| || |||||||| | || ||||||| | ||||||||||| |
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|
| T |
20375013 |
gccgtggttgtattgtcgtgtcagtatgcagtttatgcttgaaagcagatgaatcattggaacatctttt |
20374944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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