View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_28 (Length: 240)
Name: NF10666_low_28
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 11635257 - 11635387
Alignment:
| Q |
18 |
gattctctatgcgccatgacgataagaagttcaaacttgagctttcatacgagaatatttggaagattgagctgcatcaaccatggtttaaaactgcaaa |
117 |
Q |
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| T |
11635257 |
gattctctatgcaccatgaaaataagaagttcaaacttgagctttcgtatgagaatatttggaagattgagctgcatcaaccacagggtaaaactgcaaa |
11635356 |
T |
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| Q |
118 |
gtatctattgattcaggttgttaaattcaac |
148 |
Q |
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| T |
11635357 |
gtatctattgattcaggttgttaaattcaac |
11635387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 11686544 - 11686419
Alignment:
| Q |
18 |
gattctctatgcgccatgacgataagaagttcaaacttgagctttcatacgagaatatttggaagattgagctgcatcaaccatggtttaaaactgcaaa |
117 |
Q |
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| T |
11686544 |
gattctctatgcgccatcatgataagaagttcaaacttgagctttcatatgagaacattgggaagattgagctgcatcgaccacggggtaaaactgccaa |
11686445 |
T |
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| Q |
118 |
gtatctattgattcaggttgttaaat |
143 |
Q |
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| T |
11686444 |
gtatctattgattcaggttgttaaat |
11686419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 11690556 - 11690431
Alignment:
| Q |
18 |
gattctctatgcgccatgacgataagaagttcaaacttgagctttcatacgagaatatttggaagattgagctgcatcaaccatggtttaaaactgcaaa |
117 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||| || ||||||||| || |
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| T |
11690556 |
gattctctatgcgccatcatgataagaagttcaaacttgagctttcatatgagaacattgggaagattgagctgcatcgaccacggggtaaaactgccaa |
11690457 |
T |
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| Q |
118 |
gtatctattgattcaggttgttaaat |
143 |
Q |
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| T |
11690456 |
gtatctattgattcaggttgttaaat |
11690431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 11627490 - 11627608
Alignment:
| Q |
30 |
gccatgacgataagaagttcaaacttgagctttcatacgagaatatttggaagattgagctgcatcaaccatggtttaaaactgcaaagtatctattgat |
129 |
Q |
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|||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
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| T |
11627490 |
gccatgacaataagacattcaaacttgagctttcatatgagaatatttggaagattgagctgcatcaaccacggagcaaaactacaaagtatctattgat |
11627589 |
T |
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| Q |
130 |
tcaggttgttaaattcaac |
148 |
Q |
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| T |
11627590 |
tcaggttgttaatttcaac |
11627608 |
T |
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