View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_3 (Length: 409)
Name: NF10666_low_3
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 22 - 396
Target Start/End: Complemental strand, 47186141 - 47185767
Alignment:
| Q |
22 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
121 |
Q |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
|
| Q |
122 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47185942 |
T |
|
| Q |
222 |
ttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgcttccaatagaagtacctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47185941 |
ttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgcttccaatagaagtaccct |
47185842 |
T |
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| Q |
322 |
tctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatga |
396 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47185841 |
tctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatga |
47185767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 47198701 - 47198306
Alignment:
| Q |
1 |
aaaaatcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagct |
100 |
Q |
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| T |
47198701 |
aaaaatcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagct |
47198602 |
T |
|
| Q |
101 |
gatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198601 |
gatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccacca |
47198502 |
T |
|
| Q |
201 |
ccaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
47198501 |
ccaacattgcatagcctttgcttaagctatctgagtgatcttggagtttagccccaagcactatgccaattacaacttgggacacaaacatttgcacaca |
47198402 |
T |
|
| Q |
301 |
tgcttccaatagaagtacctttctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatga |
396 |
Q |
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| T |
47198401 |
tgcttccaataagagcacccttctcccagctttgtccacaaaatatacagacactaaagtgcataggacattcacacctcctgtgatcactgatga |
47198306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
86 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
168 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
38 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
137 |
Q |
| |
|
||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
|
| Q |
138 |
accaaccaagtggaccccatgaccatgcaaa |
168 |
Q |
| |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
116 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
215 |
Q |
| |
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|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
216 |
ctttg |
220 |
Q |
| |
|
||||| |
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|
| T |
41414149 |
ctttg |
41414153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
89 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
168 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
123 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
168 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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