View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10666_low_30 (Length: 239)
Name: NF10666_low_30
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2134287 - 2134510
Alignment:
| Q |
1 |
cagaattgacaaaatggtggtcgtgtgcaagtagtggcatatttaaattgacaaaattgtaagcaacatttaacattttagcccc-aatatgctaaattg |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2134287 |
cagaattgacaaaatggtggtcgtctgcaagtagtggcatatttaaattgacaaaattgtaagcaacatttaacattttagcccccaatatgctaaattg |
2134386 |
T |
|
| Q |
100 |
ctgtgtagatgccaatagtttgagaagatgatccttaatcatctaaacgctcttcttcaacttgaccaactacaaaagttaagataaaaatgtattaaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2134387 |
ttgtgtagatgccaatagtttgagaagatgatccttaatcatctaaacgctcttcttcaacttgaccaactacaaaagttaagat-aaaatgtattaaaa |
2134485 |
T |
|
| Q |
200 |
tttatgttccctttacgaaatacat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2134486 |
tttatgttccctttacgaaatacat |
2134510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 2066254 - 2066185
Alignment:
| Q |
142 |
ctaaacgctcttcttcaacttgaccaactacaaaa-gttaagataaaaatgtattaaaatttatgttccc |
210 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||| |||||| |||| |
|
|
| T |
2066254 |
ctaaacgctcttcttcaacatgaccatctacaaaaggttaagataaaaattcattaaactttatgctccc |
2066185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University