View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_32 (Length: 236)
Name: NF10666_low_32
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 20277613 - 20277839
Alignment:
| Q |
14 |
aaaggaaaatgaggaaatcaactatcacatatggaactcctttcactagaagaatctaagaatcatgccaaacatagccgatctttaaaatgttta--tc |
111 |
Q |
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| T |
20277613 |
aaaggaaaatgaggaaatcaactatcacatatggaactcctttctctagaggaatctaagaatcatgacaaacatagccgatctttaaaatgtttatctc |
20277712 |
T |
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| Q |
112 |
ttaatctgccttcctaccccttatgatcaatgactatagcctcgtaaattaggtagaacaaaatggacatgg----------------caccattaccac |
195 |
Q |
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| T |
20277713 |
ttaatctgccttcctaccccttatgatcaatgactatagcctcgtaaattaggtagaacaaaatggacatggagggaagcattgtactcaccattaccac |
20277812 |
T |
|
| Q |
196 |
attctccaactcaatgatcttgataat |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20277813 |
attctccaactcaatgatcttgataat |
20277839 |
T |
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