View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_34 (Length: 235)
Name: NF10666_low_34
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_34 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 13871537 - 13871316
Alignment:
| Q |
12 |
aaaacaaacaaactattaatctctatctatgggaagagtaacatttgatgattcaacctctttaaagtgtattgaagagaatataatgcaaatgagccaa |
111 |
Q |
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| T |
13871537 |
aaaacaaacaaactattaatct--atctatgggaagagtaacatttgatgattcaaactctttaaagtgtattgaagagaatataatgcaaatgtgccaa |
13871440 |
T |
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| Q |
112 |
tagtgtgacttatattccaggacttacggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatca |
211 |
Q |
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| T |
13871439 |
tagtgtgacttatattccaggacttacggattactaacaaacaagatatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatca |
13871340 |
T |
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| Q |
212 |
tgtgtttgggcgacaaagacattt |
235 |
Q |
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| T |
13871339 |
tgtgtttgggcgacaaagacattt |
13871316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 12957481 - 12957543
Alignment:
| Q |
130 |
aggacttacggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaaca |
192 |
Q |
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| T |
12957481 |
aggacttactgattactaacaaacaagttatcttaactaaatgtatttccaatagttttaaca |
12957543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 13873776 - 13873703
Alignment:
| Q |
139 |
ggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatcat |
212 |
Q |
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| T |
13873776 |
ggattactaataaacaaattatcttaactaaatgaatttccaatagttttatcattgaaattttctttggtcat |
13873703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 13877671 - 13877603
Alignment:
| Q |
139 |
ggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttg |
207 |
Q |
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| T |
13877671 |
ggattactaataaataaattatcttaactaaatgaatttccaatagttttatcattgaaattttctttg |
13877603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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