View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_36 (Length: 227)
Name: NF10666_low_36
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 40518143 - 40518028
Alignment:
| Q |
94 |
atattatcatttaatttaatactaaggtttattgattcaaaagtaaaaactagcttgtacataatataaaactcgtctcatttgtacatcatcgaattca |
193 |
Q |
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| T |
40518143 |
atattatcatttaatttaatagtaaggtttattgattcaaaagtaaaaactagcttgtacataatataaaactcgtctcatttgtacatcatcgaattca |
40518044 |
T |
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| Q |
194 |
tcatgtatgcatatat |
209 |
Q |
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|||||||||||||||| |
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| T |
40518043 |
tcatgtatgcatatat |
40518028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 40518282 - 40518203
Alignment:
| Q |
16 |
atgaattgtgaaaaagacataaacgttgaccagagaagtaaactatgtaagcttggtctaacattcataactaaaatgat |
95 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40518282 |
atgaattgtgaaaaagacataaacgttgaccagagaattaaactatgtaagcttggtctaacattcataactaaaatgat |
40518203 |
T |
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