View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_37 (Length: 223)
Name: NF10666_low_37
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 33119916 - 33119722
Alignment:
| Q |
18 |
tgtgattcgcaacgctccttagacgcgtcatcttggattaagcatgcccctggttttagctgcaaaaccaacattcgatacaagattatgtataaaagct |
117 |
Q |
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| T |
33119916 |
tgtgatgcgcagcgctccttagatgcgtcgtcttggattaagtatgcccccggttttagctgcaaacccaacatttgatacaagattatgtataagagct |
33119817 |
T |
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| Q |
118 |
cttaacaacaatgaatatat--aagagcataataaatttaaactactttgtttaccctatcggtggaagcacagaagccacaatttgattcatct |
210 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
33119816 |
cttaacaacgatgaatatatacaagagcataataaatttaaactactttgtttaccttatcggtggaatcacagaagccacaatttgattcatct |
33119722 |
T |
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