View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_6 (Length: 348)
Name: NF10666_low_6
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 36844392 - 36844711
Alignment:
| Q |
16 |
cacatgtctctgatttgatgtttccataaactcgtgttgctgttaagcaatttttgagagtttcttcccttgtgactacaacagaagatctagaagttgc |
115 |
Q |
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| T |
36844392 |
cacatgtctccgatttgatgtttccataaactcttgttgcagttgaacaatttttgagagtttcttcccttgtgactacaacagaagatctagaagttgc |
36844491 |
T |
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| Q |
116 |
gggacgatcaaactgaataggttccttaggaataccaaatgaagatgcaacagattgaaattcttttctatttacatcatcatctaatgccttagatttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36844492 |
gggacgatcaaactgaataggttccttaggaataccaaatgaagatgcaacagattgaaattcttttctatttacatcatcatctaataccttagatttc |
36844591 |
T |
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| Q |
216 |
ttggaaggcacttgattacttaaaggtgctgatctcttctttgactcaggagcagtgatggcactagcttcctgtgctatttcttcttccatcttcttca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36844592 |
ttggaaggcacttgattacttaaaggtgctgatctcttctttgactcaggagcagtgatagcactagcttcctgtgctatttcttcttccatcttcttca |
36844691 |
T |
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| Q |
316 |
tatactcctttactatatct |
335 |
Q |
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|||||||||||||||||||| |
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| T |
36844692 |
tatactcctttactatatct |
36844711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 18930173 - 18930274
Alignment:
| Q |
63 |
caatttttgagagtttcttcccttgtgactacaacagaagatctagaagttgcgggacgatcaaactgaataggttccttaggaataccaaatgaagatg |
162 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
18930173 |
caatttttgagagtttcttcccttgtgactacagcagaagttctagaagttgtaggacgatcaaactgaagaggttccttaggaatactaaatgaagatg |
18930272 |
T |
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| Q |
163 |
ca |
164 |
Q |
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|| |
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| T |
18930273 |
ca |
18930274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 18930273 - 18930348
Alignment:
| Q |
190 |
catcatcatctaatgccttagatttcttggaaggcacttgattacttaaaggtgctgatctcttctttgactcagg |
265 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
18930273 |
catcatcgtctaataccttagatttcttggaaggcacttgattacttaaagatactgatctcttctttgactcagg |
18930348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 18930355 - 18930400
Alignment:
| Q |
290 |
tgctatttcttcttccatcttcttcatatactcctttactatatct |
335 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930355 |
tgctttttcttcttccatcttcttcatatactcctttactatatct |
18930400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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