View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_7 (Length: 343)
Name: NF10666_low_7
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 41489687 - 41489361
Alignment:
| Q |
18 |
tgttggttgttaaccctgtgaaagttcaaattggaaatttcttctcnnnnnnnatt---------ttcttcaattttaccctttgagtggggatgtagta |
108 |
Q |
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| T |
41489687 |
tgttggttggtaaccctgtgaaagttcaaattggaaatttcttctcttttttatttatttttatattcttcaattttaccctttgagtggggatgtagta |
41489588 |
T |
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| Q |
109 |
ctagaagtatcataatgtttgttggaagaaatgcaaggacttattctaaccaaagtaacaatccaaccactataactacaaatagtaaatgacaaaaatt |
208 |
Q |
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| T |
41489587 |
ctagaagtatcataatgtttgttggaagaaatgcaaggacttattctaaccaaagtaacaatccaaccactataactacaaatagtaaatgacaaaaatt |
41489488 |
T |
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| Q |
209 |
aaagttgaaacaccgaggatcaaatttataactagctgctttactaattactggactcataaaatgaacctaccatgttgaaagttagtctggggtcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41489487 |
aaagttgaaacaccgaggatcaaatttataactagctgctttactaattactggactcataaaatgaacctaccatgttgaaagttagtttggggtcttt |
41489388 |
T |
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| Q |
309 |
ttatgtatgatgagtttttcctatgct |
335 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
41489387 |
ttatgtatgatgagtttttcctgtgct |
41489361 |
T |
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