View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10666_low_8 (Length: 342)
Name: NF10666_low_8
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 10168706 - 10168378
Alignment:
| Q |
1 |
ctctttcttcttatcatgtttctttgatgatcccnnnnnnnttggaaaaaccattttcaaataaagccctccactatcaatattcttcttatccatattt |
100 |
Q |
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| T |
10168706 |
ctctttcttcttatcatgtttcttagatgatcccaaagaaattggaaaaaccattttcaaataaagccctccactatcaatattcttcttatccatattt |
10168607 |
T |
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| Q |
101 |
ctactagccctaattccttctctttttcgtgtgtttttgttgctcaaattcctctcttttaccttgttattttcttcaacatgatgttcctcaacaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10168606 |
ctactagccctaattccttctctttttcgtgtgtttttgttgctcaaattcctctcttttaccttgttattttcttcaacatgatgttcctcaacaagat |
10168507 |
T |
|
| Q |
201 |
ctttcaaagtaagttcataacttgattctggcatgttcttaaccatttccattaattctctttgacctctttcaatggcttgtgtctttgattcaggtga |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10168506 |
ctttcaaagtaagttcatagcttgattctggcatgttcttaaccatttccattaactctctttgacctctttcaatggcttgtgtctttgattcaggtga |
10168407 |
T |
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| Q |
301 |
aagacttctatagttgttgcttttactct |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10168406 |
aagacttctatagttgttgcttttactct |
10168378 |
T |
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