View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10666_low_9 (Length: 341)
Name: NF10666_low_9
Description: NF10666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10666_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 53043062 - 53042757
Alignment:
| Q |
1 |
cattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattgtacccctcaaaatccaccgacaaaacacaacacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53043062 |
cattaacaatcccaccgacgaagctagcatcagtcaatcttttgactcccttcttttatcattatacccctcaaaatccaccgacaaaacacaacctatc |
53042963 |
T |
|
| Q |
101 |
caacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatatctatcgttactat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53042962 |
caacttcataaagggtatttccgtgattctacatgcagtaatacatacctacttctaaatctaggcagagatattctcccgcgatatctatcgttaccat |
53042863 |
T |
|
| Q |
201 |
tttccactccattctctcctccccatttctcgccgcaaccgggtcgggttagatccatatccattttcctccaacacaacgacagagtatactagctagc |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
53042862 |
tttccactc--------------catttctcgccgcaaccgggtcgggttagatccatatccattttcctccaacacaac-acagagtata----ctagc |
53042782 |
T |
|
| Q |
301 |
taggttgttggttggtgctgttttt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
53042781 |
taggttgttggttggtgctgttttt |
53042757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University